Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00915 and HSERO_RS00920 are separated by 22 nucleotides HSERO_RS00920 and HSERO_RS00925 are separated by 322 nucleotides HSERO_RS00925 and HSERO_RS00930 are separated by 519 nucleotides
HSERO_RS00915: HSERO_RS00915 - ATP-dependent protease, at 192,695 to 194,041
_RS00915
HSERO_RS00920: HSERO_RS00920 - hypothetical protein, at 194,064 to 194,267
_RS00920
HSERO_RS00925: HSERO_RS00925 - porin, at 194,590 to 195,762
_RS00925
HSERO_RS00930: HSERO_RS00930 - hypothetical protein, at 196,282 to 197,823
_RS00930
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.597 kb on + strand, within HSERO_RS00915 at 193.605 kb on - strand, within HSERO_RS00915 at 193.643 kb on - strand, within HSERO_RS00915 at 193.645 kb on + strand, within HSERO_RS00915 at 193.653 kb on - strand, within HSERO_RS00915 at 193.661 kb on - strand, within HSERO_RS00915 at 193.779 kb on - strand, within HSERO_RS00915 at 193.825 kb on + strand, within HSERO_RS00915 at 193.901 kb on - strand, within HSERO_RS00915 at 193.941 kb on + strand at 193.960 kb on - strand at 193.960 kb on - strand at 193.988 kb on - strand at 194.099 kb on + strand, within HSERO_RS00920 at 194.145 kb on - strand, within HSERO_RS00920 at 194.152 kb on - strand, within HSERO_RS00920 at 194.219 kb on - strand, within HSERO_RS00920 at 194.221 kb on + strand, within HSERO_RS00920 at 194.369 kb on - strand at 194.405 kb on - strand at 194.417 kb on - strand at 194.501 kb on + strand at 194.501 kb on + strand at 194.507 kb on - strand at 194.509 kb on - strand at 194.531 kb on - strand at 194.559 kb on + strand at 194.916 kb on - strand, within HSERO_RS00925 at 194.949 kb on - strand, within HSERO_RS00925 at 194.949 kb on - strand, within HSERO_RS00925 at 194.992 kb on + strand at 195.033 kb on - strand, within HSERO_RS00925 at 195.139 kb on + strand, within HSERO_RS00925 at 195.147 kb on - strand, within HSERO_RS00925 at 195.220 kb on - strand, within HSERO_RS00925 at 195.230 kb on - strand, within HSERO_RS00925 at 195.313 kb on + strand, within HSERO_RS00925 at 195.313 kb on + strand, within HSERO_RS00925 at 195.321 kb on - strand, within HSERO_RS00925 at 195.321 kb on - strand, within HSERO_RS00925 at 195.607 kb on - strand, within HSERO_RS00925 at 195.694 kb on - strand at 195.964 kb on - strand at 196.005 kb on + strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.316 kb on - strand at 196.402 kb on - strand at 196.486 kb on - strand, within HSERO_RS00930 at 196.488 kb on + strand, within HSERO_RS00930 at 196.595 kb on + strand, within HSERO_RS00930
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 193,597 + HSERO_RS00915 0.67 +2.2 193,605 - HSERO_RS00915 0.68 -2.3 193,643 - HSERO_RS00915 0.70 -1.5 193,645 + HSERO_RS00915 0.71 -0.4 193,653 - HSERO_RS00915 0.71 -2.3 193,661 - HSERO_RS00915 0.72 +0.0 193,779 - HSERO_RS00915 0.80 -1.2 193,825 + HSERO_RS00915 0.84 -0.5 193,901 - HSERO_RS00915 0.90 -1.4 193,941 + +1.4 193,960 - -2.5 193,960 - +0.8 193,988 - -0.8 194,099 + HSERO_RS00920 0.17 -1.4 194,145 - HSERO_RS00920 0.40 -0.5 194,152 - HSERO_RS00920 0.43 +0.3 194,219 - HSERO_RS00920 0.76 -1.0 194,221 + HSERO_RS00920 0.77 +0.2 194,369 - +0.5 194,405 - -0.5 194,417 - +0.7 194,501 + +0.9 194,501 + +0.2 194,507 - +0.0 194,509 - +1.2 194,531 - -0.6 194,559 + -0.4 194,916 - HSERO_RS00925 0.28 -0.4 194,949 - HSERO_RS00925 0.31 +1.3 194,949 - HSERO_RS00925 0.31 -0.8 194,992 + +1.8 195,033 - HSERO_RS00925 0.38 -0.1 195,139 + HSERO_RS00925 0.47 +0.4 195,147 - HSERO_RS00925 0.47 -0.6 195,220 - HSERO_RS00925 0.54 -0.0 195,230 - HSERO_RS00925 0.55 +1.5 195,313 + HSERO_RS00925 0.62 +0.8 195,313 + HSERO_RS00925 0.62 +0.1 195,321 - HSERO_RS00925 0.62 -0.2 195,321 - HSERO_RS00925 0.62 -1.1 195,607 - HSERO_RS00925 0.87 -0.2 195,694 - +0.0 195,964 - +0.2 196,005 + -0.4 196,039 - +0.3 196,039 - +1.2 196,316 - -0.0 196,402 - -1.1 196,486 - HSERO_RS00930 0.13 +1.5 196,488 + HSERO_RS00930 0.13 +0.5 196,595 + HSERO_RS00930 0.20 +0.2
Or see this region's nucleotide sequence