Experiment: Arabinan from sugar beet 5mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08885 and HMPREF1058_RS08880 are separated by 10 nucleotides HMPREF1058_RS08880 and HMPREF1058_RS08875 are separated by 162 nucleotides
HMPREF1058_RS08885: HMPREF1058_RS08885 - transposase, at 1,007,516 to 1,008,520
_RS08885
HMPREF1058_RS08880: HMPREF1058_RS08880 - transposase family protein, at 1,008,531 to 1,008,881
_RS08880
HMPREF1058_RS08875: HMPREF1058_RS08875 - rhamnulose-1-phosphate aldolase, at 1,009,044 to 1,009,853
_RS08875
Position (kb) 1008
1009 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 1008.919 kb on + strand at 1009.010 kb on + strand at 1009.036 kb on - strand at 1009.037 kb on + strand at 1009.045 kb on + strand at 1009.186 kb on - strand, within HMPREF1058_RS08875 at 1009.445 kb on - strand, within HMPREF1058_RS08875 at 1009.455 kb on + strand, within HMPREF1058_RS08875 at 1009.455 kb on + strand, within HMPREF1058_RS08875 at 1009.455 kb on + strand, within HMPREF1058_RS08875 at 1009.455 kb on + strand, within HMPREF1058_RS08875 at 1009.456 kb on - strand, within HMPREF1058_RS08875 at 1009.469 kb on - strand, within HMPREF1058_RS08875 at 1009.538 kb on - strand, within HMPREF1058_RS08875 at 1009.538 kb on - strand, within HMPREF1058_RS08875 at 1009.560 kb on - strand, within HMPREF1058_RS08875 at 1009.613 kb on + strand, within HMPREF1058_RS08875 at 1009.717 kb on - strand, within HMPREF1058_RS08875 at 1009.720 kb on + strand, within HMPREF1058_RS08875 at 1009.742 kb on + strand, within HMPREF1058_RS08875 at 1009.743 kb on - strand, within HMPREF1058_RS08875 at 1009.745 kb on + strand, within HMPREF1058_RS08875 at 1009.801 kb on - strand at 1009.806 kb on - strand at 1009.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinan from sugar beet 5mg/ml (C) remove 1,008,919 + -1.0 1,009,010 + -0.6 1,009,036 - +0.6 1,009,037 + -0.6 1,009,045 + -0.0 1,009,186 - HMPREF1058_RS08875 0.18 -0.4 1,009,445 - HMPREF1058_RS08875 0.50 -6.3 1,009,455 + HMPREF1058_RS08875 0.51 -4.1 1,009,455 + HMPREF1058_RS08875 0.51 -4.0 1,009,455 + HMPREF1058_RS08875 0.51 -3.4 1,009,455 + HMPREF1058_RS08875 0.51 -7.1 1,009,456 - HMPREF1058_RS08875 0.51 -3.6 1,009,469 - HMPREF1058_RS08875 0.52 -4.5 1,009,538 - HMPREF1058_RS08875 0.61 -2.5 1,009,538 - HMPREF1058_RS08875 0.61 -2.3 1,009,560 - HMPREF1058_RS08875 0.64 -7.1 1,009,613 + HMPREF1058_RS08875 0.70 -3.4 1,009,717 - HMPREF1058_RS08875 0.83 -6.4 1,009,720 + HMPREF1058_RS08875 0.83 -4.9 1,009,742 + HMPREF1058_RS08875 0.86 -3.6 1,009,743 - HMPREF1058_RS08875 0.86 -1.4 1,009,745 + HMPREF1058_RS08875 0.87 -3.6 1,009,801 - -4.1 1,009,806 - -4.9 1,009,806 - -1.8
Or see this region's nucleotide sequence