Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02657

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02655 and CCNA_02656 are separated by 67 nucleotidesCCNA_02656 and CCNA_02657 are separated by 12 nucleotidesCCNA_02657 and CCNA_02658 are separated by 2 nucleotidesCCNA_02658 and CCNA_02659 are separated by 173 nucleotides CCNA_02655: CCNA_02655 - NTF2 superfamily protein, at 2,808,776 to 2,809,300 _02655 CCNA_02656: CCNA_02656 - AraC-family transcriptional regulator, at 2,809,368 to 2,810,180 _02656 CCNA_02657: CCNA_02657 - hypothetical protein, at 2,810,193 to 2,810,789 _02657 CCNA_02658: CCNA_02658 - 3-hydroxybutyryl-CoA dehydratase, at 2,810,792 to 2,811,589 _02658 CCNA_02659: CCNA_02659 - two-component receiver domain protein, at 2,811,763 to 2,812,125 _02659 Position (kb) 2810 2811Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2809.230 kb on - strand, within CCNA_02655at 2809.308 kb on + strandat 2809.308 kb on + strandat 2809.308 kb on + strandat 2809.316 kb on - strandat 2809.316 kb on - strandat 2809.316 kb on - strandat 2809.367 kb on - strandat 2809.373 kb on - strandat 2809.379 kb on - strandat 2809.379 kb on - strandat 2809.383 kb on - strandat 2809.434 kb on - strandat 2809.448 kb on + strandat 2809.566 kb on + strand, within CCNA_02656at 2809.582 kb on - strand, within CCNA_02656at 2809.650 kb on + strand, within CCNA_02656at 2809.658 kb on - strand, within CCNA_02656at 2809.660 kb on - strand, within CCNA_02656at 2809.725 kb on - strand, within CCNA_02656at 2809.735 kb on + strand, within CCNA_02656at 2809.763 kb on + strand, within CCNA_02656at 2809.773 kb on - strand, within CCNA_02656at 2809.773 kb on - strand, within CCNA_02656at 2809.834 kb on + strand, within CCNA_02656at 2809.842 kb on - strand, within CCNA_02656at 2809.847 kb on - strand, within CCNA_02656at 2809.858 kb on + strand, within CCNA_02656at 2809.867 kb on + strand, within CCNA_02656at 2809.877 kb on - strand, within CCNA_02656at 2809.894 kb on + strand, within CCNA_02656at 2809.940 kb on + strand, within CCNA_02656at 2809.948 kb on - strand, within CCNA_02656at 2809.948 kb on - strand, within CCNA_02656at 2809.956 kb on + strand, within CCNA_02656at 2809.957 kb on + strand, within CCNA_02656at 2809.964 kb on - strand, within CCNA_02656at 2809.964 kb on - strand, within CCNA_02656at 2809.993 kb on - strand, within CCNA_02656at 2810.055 kb on + strand, within CCNA_02656at 2810.063 kb on - strand, within CCNA_02656at 2810.144 kb on + strandat 2810.153 kb on - strandat 2810.190 kb on + strandat 2810.208 kb on - strandat 2810.225 kb on - strandat 2810.225 kb on - strandat 2810.250 kb on + strandat 2810.252 kb on - strandat 2810.275 kb on - strand, within CCNA_02657at 2810.284 kb on + strand, within CCNA_02657at 2810.299 kb on - strand, within CCNA_02657at 2810.310 kb on + strand, within CCNA_02657at 2810.312 kb on - strand, within CCNA_02657at 2810.312 kb on - strand, within CCNA_02657at 2810.317 kb on + strand, within CCNA_02657at 2810.317 kb on + strand, within CCNA_02657at 2810.324 kb on - strand, within CCNA_02657at 2810.351 kb on - strand, within CCNA_02657at 2810.403 kb on + strandat 2810.559 kb on + strand, within CCNA_02657at 2810.591 kb on + strand, within CCNA_02657at 2810.591 kb on + strand, within CCNA_02657at 2810.596 kb on + strand, within CCNA_02657at 2810.612 kb on - strand, within CCNA_02657at 2810.622 kb on + strand, within CCNA_02657at 2810.641 kb on - strand, within CCNA_02657at 2810.642 kb on - strand, within CCNA_02657at 2810.672 kb on - strand, within CCNA_02657at 2810.675 kb on + strand, within CCNA_02657at 2810.683 kb on - strand, within CCNA_02657at 2810.683 kb on - strand, within CCNA_02657at 2810.687 kb on + strand, within CCNA_02657at 2810.777 kb on + strandat 2810.787 kb on - strandat 2810.801 kb on + strandat 2810.806 kb on + strandat 2810.806 kb on + strandat 2810.806 kb on + strandat 2810.806 kb on + strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.809 kb on - strandat 2810.809 kb on - strandat 2810.841 kb on - strandat 2810.904 kb on - strand, within CCNA_02658at 2810.946 kb on + strand, within CCNA_02658at 2810.954 kb on - strand, within CCNA_02658at 2810.996 kb on - strand, within CCNA_02658at 2811.000 kb on - strand, within CCNA_02658at 2811.001 kb on - strand, within CCNA_02658at 2811.057 kb on + strand, within CCNA_02658at 2811.065 kb on - strand, within CCNA_02658at 2811.107 kb on + strand, within CCNA_02658at 2811.120 kb on - strand, within CCNA_02658at 2811.127 kb on + strand, within CCNA_02658at 2811.240 kb on - strand, within CCNA_02658at 2811.268 kb on - strand, within CCNA_02658at 2811.268 kb on - strand, within CCNA_02658at 2811.428 kb on + strand, within CCNA_02658at 2811.446 kb on - strand, within CCNA_02658at 2811.495 kb on + strand, within CCNA_02658at 2811.516 kb on + strandat 2811.521 kb on + strandat 2811.529 kb on - strandat 2811.601 kb on + strandat 2811.643 kb on + strandat 2811.643 kb on + strandat 2811.711 kb on + strandat 2811.780 kb on + strandat 2811.780 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
2,809,230 - CCNA_02655 0.86 -2.3
2,809,308 + -0.8
2,809,308 + -0.2
2,809,308 + -1.8
2,809,316 - -1.0
2,809,316 - +0.4
2,809,316 - -0.8
2,809,367 - -0.5
2,809,373 - -0.3
2,809,379 - -1.1
2,809,379 - +0.9
2,809,383 - -1.1
2,809,434 - -0.7
2,809,448 + -1.5
2,809,566 + CCNA_02656 0.24 -0.6
2,809,582 - CCNA_02656 0.26 -0.8
2,809,650 + CCNA_02656 0.35 +1.2
2,809,658 - CCNA_02656 0.36 -0.8
2,809,660 - CCNA_02656 0.36 -0.6
2,809,725 - CCNA_02656 0.44 +2.0
2,809,735 + CCNA_02656 0.45 -2.2
2,809,763 + CCNA_02656 0.49 -2.0
2,809,773 - CCNA_02656 0.50 -0.3
2,809,773 - CCNA_02656 0.50 -1.3
2,809,834 + CCNA_02656 0.57 -1.9
2,809,842 - CCNA_02656 0.58 -0.1
2,809,847 - CCNA_02656 0.59 +2.0
2,809,858 + CCNA_02656 0.60 -0.3
2,809,867 + CCNA_02656 0.61 -0.9
2,809,877 - CCNA_02656 0.63 -0.5
2,809,894 + CCNA_02656 0.65 +0.2
2,809,940 + CCNA_02656 0.70 -0.9
2,809,948 - CCNA_02656 0.71 +0.2
2,809,948 - CCNA_02656 0.71 -1.0
2,809,956 + CCNA_02656 0.72 -0.4
2,809,957 + CCNA_02656 0.72 -0.6
2,809,964 - CCNA_02656 0.73 -1.3
2,809,964 - CCNA_02656 0.73 -0.2
2,809,993 - CCNA_02656 0.77 -0.5
2,810,055 + CCNA_02656 0.85 -1.1
2,810,063 - CCNA_02656 0.85 -2.2
2,810,144 + -0.3
2,810,153 - -0.3
2,810,190 + -1.5
2,810,208 - -0.1
2,810,225 - -0.0
2,810,225 - +0.7
2,810,250 + +1.0
2,810,252 - +1.1
2,810,275 - CCNA_02657 0.14 -0.8
2,810,284 + CCNA_02657 0.15 -0.3
2,810,299 - CCNA_02657 0.18 +1.3
2,810,310 + CCNA_02657 0.20 +0.0
2,810,312 - CCNA_02657 0.20 +0.7
2,810,312 - CCNA_02657 0.20 +0.9
2,810,317 + CCNA_02657 0.21 -1.8
2,810,317 + CCNA_02657 0.21 -2.2
2,810,324 - CCNA_02657 0.22 +0.4
2,810,351 - CCNA_02657 0.26 +1.9
2,810,403 + +1.4
2,810,559 + CCNA_02657 0.61 -0.3
2,810,591 + CCNA_02657 0.67 -0.0
2,810,591 + CCNA_02657 0.67 +0.4
2,810,596 + CCNA_02657 0.68 +0.3
2,810,612 - CCNA_02657 0.70 +0.7
2,810,622 + CCNA_02657 0.72 +0.6
2,810,641 - CCNA_02657 0.75 -0.8
2,810,642 - CCNA_02657 0.75 +1.4
2,810,672 - CCNA_02657 0.80 +3.0
2,810,675 + CCNA_02657 0.81 -1.0
2,810,683 - CCNA_02657 0.82 +0.1
2,810,683 - CCNA_02657 0.82 -1.3
2,810,687 + CCNA_02657 0.83 -0.5
2,810,777 + -0.6
2,810,787 - -0.8
2,810,801 + -1.3
2,810,806 + +3.0
2,810,806 + +1.5
2,810,806 + +1.9
2,810,806 + +2.3
2,810,807 - +0.3
2,810,807 - +1.3
2,810,807 - +0.1
2,810,807 - +0.4
2,810,807 - +0.4
2,810,807 - +1.1
2,810,809 - +1.0
2,810,809 - -0.5
2,810,841 - +0.9
2,810,904 - CCNA_02658 0.14 -0.1
2,810,946 + CCNA_02658 0.19 -1.8
2,810,954 - CCNA_02658 0.20 +2.0
2,810,996 - CCNA_02658 0.26 -0.0
2,811,000 - CCNA_02658 0.26 -0.1
2,811,001 - CCNA_02658 0.26 -0.7
2,811,057 + CCNA_02658 0.33 -1.5
2,811,065 - CCNA_02658 0.34 -1.4
2,811,107 + CCNA_02658 0.39 -1.2
2,811,120 - CCNA_02658 0.41 -1.6
2,811,127 + CCNA_02658 0.42 -0.0
2,811,240 - CCNA_02658 0.56 +0.8
2,811,268 - CCNA_02658 0.60 -1.5
2,811,268 - CCNA_02658 0.60 +0.5
2,811,428 + CCNA_02658 0.80 -0.5
2,811,446 - CCNA_02658 0.82 +0.5
2,811,495 + CCNA_02658 0.88 -1.3
2,811,516 + +0.7
2,811,521 + -1.2
2,811,529 - +0.7
2,811,601 + -0.3
2,811,643 + -0.6
2,811,643 + -0.9
2,811,711 + +0.4
2,811,780 + +0.5
2,811,780 + +2.4

Or see this region's nucleotide sequence