Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21620

Experiment: R2A with Zinc 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21615 and CA265_RS21620 are separated by 104 nucleotidesCA265_RS21620 and CA265_RS21625 are separated by 18 nucleotides CA265_RS21615: CA265_RS21615 - metalloprotease, at 5,318,289 to 5,319,131 _RS21615 CA265_RS21620: CA265_RS21620 - hybrid sensor histidine kinase/response regulator, at 5,319,236 to 5,320,369 _RS21620 CA265_RS21625: CA265_RS21625 - histidine kinase, at 5,320,388 to 5,323,972 _RS21625 Position (kb) 5319 5320 5321Strain fitness (log2 ratio) -2 -1 0 1 2at 5318.239 kb on + strandat 5318.257 kb on + strandat 5318.257 kb on + strandat 5318.270 kb on + strandat 5318.288 kb on + strandat 5318.289 kb on - strandat 5318.371 kb on + strandat 5318.372 kb on - strandat 5318.377 kb on + strand, within CA265_RS21615at 5318.380 kb on + strand, within CA265_RS21615at 5318.381 kb on - strand, within CA265_RS21615at 5318.389 kb on + strand, within CA265_RS21615at 5318.571 kb on + strand, within CA265_RS21615at 5318.572 kb on - strand, within CA265_RS21615at 5318.572 kb on - strand, within CA265_RS21615at 5318.669 kb on + strand, within CA265_RS21615at 5318.694 kb on + strand, within CA265_RS21615at 5318.749 kb on + strand, within CA265_RS21615at 5318.904 kb on - strand, within CA265_RS21615at 5318.904 kb on - strand, within CA265_RS21615at 5318.959 kb on + strand, within CA265_RS21615at 5319.060 kb on + strandat 5319.061 kb on - strandat 5319.093 kb on - strandat 5319.095 kb on + strandat 5319.114 kb on - strandat 5319.202 kb on + strandat 5319.231 kb on + strandat 5319.245 kb on - strandat 5319.289 kb on - strandat 5319.289 kb on - strandat 5319.440 kb on - strand, within CA265_RS21620at 5319.464 kb on - strand, within CA265_RS21620at 5319.465 kb on + strand, within CA265_RS21620at 5319.485 kb on - strand, within CA265_RS21620at 5319.485 kb on - strand, within CA265_RS21620at 5319.742 kb on + strand, within CA265_RS21620at 5319.743 kb on - strand, within CA265_RS21620at 5319.841 kb on - strand, within CA265_RS21620at 5319.841 kb on - strand, within CA265_RS21620at 5320.061 kb on - strand, within CA265_RS21620at 5320.075 kb on + strand, within CA265_RS21620at 5320.106 kb on - strand, within CA265_RS21620at 5320.242 kb on - strand, within CA265_RS21620at 5320.242 kb on - strand, within CA265_RS21620at 5320.243 kb on + strand, within CA265_RS21620at 5320.244 kb on - strand, within CA265_RS21620at 5320.377 kb on + strandat 5320.446 kb on + strandat 5320.469 kb on + strandat 5320.470 kb on - strandat 5320.472 kb on - strandat 5320.493 kb on - strandat 5320.493 kb on - strandat 5320.549 kb on + strandat 5320.550 kb on - strandat 5320.550 kb on - strandat 5320.550 kb on - strandat 5320.551 kb on + strandat 5320.551 kb on + strandat 5320.560 kb on + strandat 5320.626 kb on - strandat 5320.656 kb on + strandat 5320.679 kb on - strandat 5320.687 kb on + strandat 5320.710 kb on + strandat 5320.823 kb on + strand, within CA265_RS21625at 5320.853 kb on - strand, within CA265_RS21625at 5320.920 kb on - strand, within CA265_RS21625at 5320.966 kb on + strand, within CA265_RS21625at 5320.989 kb on + strand, within CA265_RS21625at 5320.989 kb on + strand, within CA265_RS21625at 5321.046 kb on - strand, within CA265_RS21625at 5321.063 kb on - strand, within CA265_RS21625at 5321.063 kb on - strand, within CA265_RS21625at 5321.108 kb on + strand, within CA265_RS21625at 5321.247 kb on + strand, within CA265_RS21625at 5321.296 kb on + strand, within CA265_RS21625at 5321.296 kb on + strand, within CA265_RS21625at 5321.301 kb on + strand, within CA265_RS21625

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.08 mM
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5,318,239 + -1.3
5,318,257 + -0.1
5,318,257 + +2.5
5,318,270 + +0.8
5,318,288 + -0.2
5,318,289 - +0.1
5,318,371 + -0.2
5,318,372 - -1.1
5,318,377 + CA265_RS21615 0.10 -0.1
5,318,380 + CA265_RS21615 0.11 -0.4
5,318,381 - CA265_RS21615 0.11 +1.2
5,318,389 + CA265_RS21615 0.12 -2.7
5,318,571 + CA265_RS21615 0.33 -1.2
5,318,572 - CA265_RS21615 0.34 -0.4
5,318,572 - CA265_RS21615 0.34 +0.2
5,318,669 + CA265_RS21615 0.45 -0.3
5,318,694 + CA265_RS21615 0.48 +0.2
5,318,749 + CA265_RS21615 0.55 -0.6
5,318,904 - CA265_RS21615 0.73 +0.4
5,318,904 - CA265_RS21615 0.73 -0.6
5,318,959 + CA265_RS21615 0.79 +0.2
5,319,060 + +0.1
5,319,061 - +0.1
5,319,093 - -0.8
5,319,095 + -0.8
5,319,114 - +0.4
5,319,202 + +0.6
5,319,231 + +1.4
5,319,245 - -0.4
5,319,289 - +0.0
5,319,289 - +0.8
5,319,440 - CA265_RS21620 0.18 +1.1
5,319,464 - CA265_RS21620 0.20 +1.1
5,319,465 + CA265_RS21620 0.20 +0.6
5,319,485 - CA265_RS21620 0.22 -0.7
5,319,485 - CA265_RS21620 0.22 +0.6
5,319,742 + CA265_RS21620 0.45 +0.8
5,319,743 - CA265_RS21620 0.45 +0.7
5,319,841 - CA265_RS21620 0.53 +0.7
5,319,841 - CA265_RS21620 0.53 +0.2
5,320,061 - CA265_RS21620 0.73 -0.1
5,320,075 + CA265_RS21620 0.74 +0.4
5,320,106 - CA265_RS21620 0.77 -0.5
5,320,242 - CA265_RS21620 0.89 +0.3
5,320,242 - CA265_RS21620 0.89 +0.7
5,320,243 + CA265_RS21620 0.89 +1.6
5,320,244 - CA265_RS21620 0.89 +0.9
5,320,377 + -0.1
5,320,446 + +0.1
5,320,469 + -0.7
5,320,470 - +0.2
5,320,472 - -1.1
5,320,493 - -0.3
5,320,493 - +0.4
5,320,549 + +0.7
5,320,550 - +0.4
5,320,550 - +0.2
5,320,550 - -0.4
5,320,551 + -0.5
5,320,551 + -2.1
5,320,560 + -0.8
5,320,626 - +0.1
5,320,656 + -0.3
5,320,679 - +0.2
5,320,687 + +0.6
5,320,710 + +0.6
5,320,823 + CA265_RS21625 0.12 +0.2
5,320,853 - CA265_RS21625 0.13 +0.6
5,320,920 - CA265_RS21625 0.15 +0.5
5,320,966 + CA265_RS21625 0.16 +0.2
5,320,989 + CA265_RS21625 0.17 -1.1
5,320,989 + CA265_RS21625 0.17 -0.3
5,321,046 - CA265_RS21625 0.18 +0.2
5,321,063 - CA265_RS21625 0.19 -1.0
5,321,063 - CA265_RS21625 0.19 +0.8
5,321,108 + CA265_RS21625 0.20 +0.7
5,321,247 + CA265_RS21625 0.24 +0.5
5,321,296 + CA265_RS21625 0.25 +0.6
5,321,296 + CA265_RS21625 0.25 -1.2
5,321,301 + CA265_RS21625 0.25 -0.4

Or see this region's nucleotide sequence