Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15070

Experiment: R2A with Zinc 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15060 and CA265_RS15065 are separated by 318 nucleotidesCA265_RS15065 and CA265_RS15070 are separated by 63 nucleotidesCA265_RS15070 and CA265_RS15075 are separated by 100 nucleotides CA265_RS15060: CA265_RS15060 - glutamate racemase, at 3,795,703 to 3,796,521 _RS15060 CA265_RS15065: CA265_RS15065 - hypothetical protein, at 3,796,840 to 3,797,418 _RS15065 CA265_RS15070: CA265_RS15070 - hypothetical protein, at 3,797,482 to 3,798,012 _RS15070 CA265_RS15075: CA265_RS15075 - outer membrane protein assembly factor BamA, at 3,798,113 to 3,800,656 _RS15075 Position (kb) 3797 3798 3799Strain fitness (log2 ratio) -1 0 1 2 3at 3796.603 kb on + strandat 3796.604 kb on - strandat 3796.609 kb on + strandat 3796.610 kb on - strandat 3796.741 kb on - strandat 3796.764 kb on + strandat 3796.765 kb on - strandat 3796.775 kb on + strandat 3797.488 kb on - strandat 3797.512 kb on + strandat 3797.558 kb on + strand, within CA265_RS15070at 3797.646 kb on + strand, within CA265_RS15070at 3797.710 kb on - strand, within CA265_RS15070at 3797.815 kb on - strand, within CA265_RS15070at 3797.817 kb on - strand, within CA265_RS15070at 3797.903 kb on + strand, within CA265_RS15070at 3797.926 kb on - strand, within CA265_RS15070at 3797.938 kb on + strand, within CA265_RS15070at 3798.031 kb on + strandat 3798.032 kb on - strandat 3798.037 kb on + strandat 3798.088 kb on + strandat 3798.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.08 mM
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3,796,603 + -0.4
3,796,604 - -0.6
3,796,609 + -0.1
3,796,610 - +2.3
3,796,741 - +0.2
3,796,764 + +1.0
3,796,765 - -0.4
3,796,775 + +0.6
3,797,488 - +0.2
3,797,512 + +1.5
3,797,558 + CA265_RS15070 0.14 +1.6
3,797,646 + CA265_RS15070 0.31 +0.1
3,797,710 - CA265_RS15070 0.43 +0.8
3,797,815 - CA265_RS15070 0.63 +1.4
3,797,817 - CA265_RS15070 0.63 +1.2
3,797,903 + CA265_RS15070 0.79 +2.6
3,797,926 - CA265_RS15070 0.84 +2.0
3,797,938 + CA265_RS15070 0.86 +2.6
3,798,031 + +2.8
3,798,032 - +0.7
3,798,037 + +2.3
3,798,088 + +2.2
3,798,107 + +2.0

Or see this region's nucleotide sequence