Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33285 and BPHYT_RS33290 overlap by 11 nucleotides BPHYT_RS33290 and BPHYT_RS33295 overlap by 4 nucleotides BPHYT_RS33295 and BPHYT_RS33300 overlap by 14 nucleotides
BPHYT_RS33285: BPHYT_RS33285 - sugar ABC transporter permease, at 3,049,460 to 3,050,269
_RS33285
BPHYT_RS33290: BPHYT_RS33290 - ABC transporter permease, at 3,050,259 to 3,051,155
_RS33290
BPHYT_RS33295: BPHYT_RS33295 - ABC transporter ATP-binding protein, at 3,051,152 to 3,052,240
_RS33295
BPHYT_RS33300: BPHYT_RS33300 - ABC transporter, at 3,052,227 to 3,053,333
_RS33300
Position (kb) 3051
3052
3053 Strain fitness (log2 ratio) -1
0
1 at 3050.227 kb on - strand at 3050.261 kb on - strand at 3050.323 kb on + strand at 3050.324 kb on - strand at 3050.359 kb on + strand, within BPHYT_RS33290 at 3050.359 kb on + strand, within BPHYT_RS33290 at 3050.558 kb on + strand, within BPHYT_RS33290 at 3050.726 kb on - strand, within BPHYT_RS33290 at 3051.055 kb on + strand, within BPHYT_RS33290 at 3052.310 kb on - strand at 3052.402 kb on + strand, within BPHYT_RS33300 at 3052.402 kb on + strand, within BPHYT_RS33300 at 3052.402 kb on + strand, within BPHYT_RS33300 at 3052.403 kb on - strand, within BPHYT_RS33300 at 3052.672 kb on + strand, within BPHYT_RS33300 at 3052.727 kb on + strand, within BPHYT_RS33300
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 3,050,227 - +0.1 3,050,261 - +0.3 3,050,323 + +0.5 3,050,324 - +0.0 3,050,359 + BPHYT_RS33290 0.11 -0.2 3,050,359 + BPHYT_RS33290 0.11 -0.2 3,050,558 + BPHYT_RS33290 0.33 -1.0 3,050,726 - BPHYT_RS33290 0.52 -0.0 3,051,055 + BPHYT_RS33290 0.89 -0.2 3,052,310 - +0.1 3,052,402 + BPHYT_RS33300 0.16 +0.2 3,052,402 + BPHYT_RS33300 0.16 +0.8 3,052,402 + BPHYT_RS33300 0.16 +0.5 3,052,403 - BPHYT_RS33300 0.16 +0.2 3,052,672 + BPHYT_RS33300 0.40 +1.0 3,052,727 + BPHYT_RS33300 0.45 -1.7
Or see this region's nucleotide sequence