Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23370

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23365 and BPHYT_RS23370 are separated by 72 nucleotidesBPHYT_RS23370 and BPHYT_RS23375 are separated by 38 nucleotidesBPHYT_RS23375 and BPHYT_RS23380 are separated by 379 nucleotides BPHYT_RS23365: BPHYT_RS23365 - glycosyl transferase, at 803,492 to 804,616 _RS23365 BPHYT_RS23370: BPHYT_RS23370 - glycosyl transferase family 1, at 804,689 to 805,879 _RS23370 BPHYT_RS23375: BPHYT_RS23375 - hypothetical protein, at 805,918 to 806,409 _RS23375 BPHYT_RS23380: BPHYT_RS23380 - hypothetical protein, at 806,789 to 807,697 _RS23380 Position (kb) 804 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1at 804.658 kb on + strandat 804.659 kb on - strandat 804.705 kb on + strandat 804.706 kb on - strandat 804.737 kb on + strandat 804.738 kb on - strandat 804.981 kb on - strand, within BPHYT_RS23370

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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804,658 + -0.9
804,659 - -0.3
804,705 + +0.2
804,706 - +0.4
804,737 + -2.9
804,738 - +0.0
804,981 - BPHYT_RS23370 0.25 -1.8

Or see this region's nucleotide sequence