Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21015

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21010 and BPHYT_RS21015 are separated by 202 nucleotidesBPHYT_RS21015 and BPHYT_RS21020 are separated by 272 nucleotides BPHYT_RS21010: BPHYT_RS21010 - D-amino acid dehydrogenase, at 271,815 to 273,062 _RS21010 BPHYT_RS21015: BPHYT_RS21015 - transcriptional regulator, at 273,265 to 274,356 _RS21015 BPHYT_RS21020: BPHYT_RS21020 - branched-chain amino acid ABC transporter substrate-binding protein, at 274,629 to 275,753 _RS21020 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1at 272.915 kb on + strand, within BPHYT_RS21010at 273.011 kb on - strandat 273.011 kb on - strandat 273.014 kb on - strandat 273.054 kb on + strandat 273.195 kb on - strandat 274.582 kb on + strandat 274.741 kb on - strandat 274.928 kb on + strand, within BPHYT_RS21020at 274.965 kb on + strand, within BPHYT_RS21020at 274.966 kb on - strand, within BPHYT_RS21020at 275.092 kb on - strand, within BPHYT_RS21020

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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272,915 + BPHYT_RS21010 0.88 +1.6
273,011 - +0.3
273,011 - -2.9
273,014 - -0.2
273,054 + +0.1
273,195 - -0.6
274,582 + +0.2
274,741 - +0.1
274,928 + BPHYT_RS21020 0.27 +0.0
274,965 + BPHYT_RS21020 0.30 +0.4
274,966 - BPHYT_RS21020 0.30 +0.6
275,092 - BPHYT_RS21020 0.41 +0.4

Or see this region's nucleotide sequence