Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20900

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20895 and BPHYT_RS20900 are separated by 319 nucleotidesBPHYT_RS20900 and BPHYT_RS20905 are separated by 386 nucleotides BPHYT_RS20895: BPHYT_RS20895 - ABC transporter, at 247,811 to 249,604 _RS20895 BPHYT_RS20900: BPHYT_RS20900 - phytanoyl-CoA dioxygenase, at 249,924 to 251,138 _RS20900 BPHYT_RS20905: BPHYT_RS20905 - hypothetical protein, at 251,525 to 252,028 _RS20905 Position (kb) 249 250 251 252Strain fitness (log2 ratio) -2 -1 0 1 2 3at 249.690 kb on + strandat 249.819 kb on + strandat 249.897 kb on + strandat 249.945 kb on - strandat 250.486 kb on - strand, within BPHYT_RS20900at 250.651 kb on - strand, within BPHYT_RS20900at 250.875 kb on + strand, within BPHYT_RS20900at 250.876 kb on - strand, within BPHYT_RS20900at 251.401 kb on - strandat 251.704 kb on - strand, within BPHYT_RS20905at 251.975 kb on + strand, within BPHYT_RS20905at 251.975 kb on + strand, within BPHYT_RS20905at 252.119 kb on + strandat 252.122 kb on + strandat 252.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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249,690 + +0.1
249,819 + +0.4
249,897 + +3.0
249,945 - -0.4
250,486 - BPHYT_RS20900 0.46 -1.4
250,651 - BPHYT_RS20900 0.60 +0.7
250,875 + BPHYT_RS20900 0.78 -1.9
250,876 - BPHYT_RS20900 0.78 -1.7
251,401 - +0.2
251,704 - BPHYT_RS20905 0.36 -0.1
251,975 + BPHYT_RS20905 0.89 -1.1
251,975 + BPHYT_RS20905 0.89 -2.3
252,119 + -0.5
252,122 + +0.2
252,128 - -1.4

Or see this region's nucleotide sequence