Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19790 and BPHYT_RS19795 overlap by 4 nucleotides BPHYT_RS19795 and BPHYT_RS19800 overlap by 8 nucleotides BPHYT_RS19800 and BPHYT_RS19805 overlap by 4 nucleotides BPHYT_RS19805 and BPHYT_RS19810 are separated by 63 nucleotides
BPHYT_RS19790: BPHYT_RS19790 - peptidase M23, at 4,452,301 to 4,454,715
_RS19790
BPHYT_RS19795: BPHYT_RS19795 - chemotaxis protein CheW, at 4,454,712 to 4,455,392
_RS19795
BPHYT_RS19800: BPHYT_RS19800 - chemotaxis protein CheR, at 4,455,385 to 4,456,815
_RS19800
BPHYT_RS19805: BPHYT_RS19805 - chemotaxis protein CheW, at 4,456,812 to 4,457,276
_RS19805
BPHYT_RS19810: BPHYT_RS19810 - chemotaxis protein, at 4,457,340 to 4,458,965
_RS19810
Position (kb) 4455
4456
4457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4455.030 kb on + strand, within BPHYT_RS19795 at 4455.030 kb on + strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.031 kb on - strand, within BPHYT_RS19795 at 4455.078 kb on - strand, within BPHYT_RS19795 at 4455.078 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.301 kb on - strand, within BPHYT_RS19795 at 4455.305 kb on - strand, within BPHYT_RS19795 at 4455.512 kb on + strand at 4455.512 kb on + strand at 4455.513 kb on - strand at 4455.513 kb on - strand at 4455.584 kb on + strand, within BPHYT_RS19800 at 4455.685 kb on + strand, within BPHYT_RS19800 at 4455.685 kb on + strand, within BPHYT_RS19800 at 4455.686 kb on - strand, within BPHYT_RS19800 at 4455.782 kb on + strand, within BPHYT_RS19800 at 4455.782 kb on + strand, within BPHYT_RS19800 at 4455.783 kb on - strand, within BPHYT_RS19800 at 4455.783 kb on - strand, within BPHYT_RS19800 at 4455.967 kb on - strand, within BPHYT_RS19800 at 4456.049 kb on - strand, within BPHYT_RS19800 at 4456.149 kb on - strand, within BPHYT_RS19800 at 4456.149 kb on - strand, within BPHYT_RS19800 at 4456.445 kb on + strand, within BPHYT_RS19800 at 4456.565 kb on + strand, within BPHYT_RS19800 at 4456.565 kb on + strand, within BPHYT_RS19800 at 4456.566 kb on - strand, within BPHYT_RS19800 at 4456.922 kb on - strand, within BPHYT_RS19805 at 4457.239 kb on + strand at 4457.427 kb on + strand at 4457.428 kb on - strand at 4457.698 kb on + strand, within BPHYT_RS19810 at 4457.699 kb on - strand, within BPHYT_RS19810 at 4457.699 kb on - strand, within BPHYT_RS19810 at 4457.699 kb on - strand, within BPHYT_RS19810 at 4457.699 kb on - strand, within BPHYT_RS19810
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 4,455,030 + BPHYT_RS19795 0.47 +0.3 4,455,030 + BPHYT_RS19795 0.47 +0.3 4,455,031 - BPHYT_RS19795 0.47 -0.3 4,455,031 - BPHYT_RS19795 0.47 -0.5 4,455,031 - BPHYT_RS19795 0.47 -0.2 4,455,031 - BPHYT_RS19795 0.47 +0.1 4,455,031 - BPHYT_RS19795 0.47 -0.7 4,455,078 - BPHYT_RS19795 0.54 +0.1 4,455,078 - BPHYT_RS19795 0.54 +0.4 4,455,301 - BPHYT_RS19795 0.86 +0.0 4,455,301 - BPHYT_RS19795 0.86 +0.9 4,455,301 - BPHYT_RS19795 0.86 +0.2 4,455,301 - BPHYT_RS19795 0.86 -2.1 4,455,305 - BPHYT_RS19795 0.87 -1.8 4,455,512 + -0.2 4,455,512 + +0.7 4,455,513 - -0.4 4,455,513 - +0.9 4,455,584 + BPHYT_RS19800 0.14 +0.1 4,455,685 + BPHYT_RS19800 0.21 -2.6 4,455,685 + BPHYT_RS19800 0.21 +0.4 4,455,686 - BPHYT_RS19800 0.21 -0.1 4,455,782 + BPHYT_RS19800 0.28 -0.9 4,455,782 + BPHYT_RS19800 0.28 +0.3 4,455,783 - BPHYT_RS19800 0.28 -0.7 4,455,783 - BPHYT_RS19800 0.28 -2.8 4,455,967 - BPHYT_RS19800 0.41 -0.9 4,456,049 - BPHYT_RS19800 0.46 +0.2 4,456,149 - BPHYT_RS19800 0.53 -0.3 4,456,149 - BPHYT_RS19800 0.53 +0.6 4,456,445 + BPHYT_RS19800 0.74 +1.8 4,456,565 + BPHYT_RS19800 0.82 -0.4 4,456,565 + BPHYT_RS19800 0.82 +0.2 4,456,566 - BPHYT_RS19800 0.83 -1.4 4,456,922 - BPHYT_RS19805 0.24 -0.2 4,457,239 + -0.2 4,457,427 + -3.2 4,457,428 - -1.8 4,457,698 + BPHYT_RS19810 0.22 +0.2 4,457,699 - BPHYT_RS19810 0.22 +1.5 4,457,699 - BPHYT_RS19810 0.22 +1.3 4,457,699 - BPHYT_RS19810 0.22 +2.2 4,457,699 - BPHYT_RS19810 0.22 -1.0
Or see this region's nucleotide sequence