Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19205 and BPHYT_RS19210 are separated by 531 nucleotides BPHYT_RS19210 and BPHYT_RS19215 are separated by 2 nucleotides BPHYT_RS19215 and BPHYT_RS19220 are separated by 90 nucleotides
BPHYT_RS19205: BPHYT_RS19205 - hypothetical protein, at 4,310,755 to 4,312,050
_RS19205
BPHYT_RS19210: BPHYT_RS19210 - integrase, at 4,312,582 to 4,314,108
_RS19210
BPHYT_RS19215: BPHYT_RS19215 - ATP-binding protein, at 4,314,111 to 4,314,899
_RS19215
BPHYT_RS19220: BPHYT_RS19220 - hypothetical protein, at 4,314,990 to 4,317,170
_RS19220
Position (kb) 4312
4313
4314
4315 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4311.713 kb on + strand, within BPHYT_RS19205 at 4311.714 kb on - strand, within BPHYT_RS19205 at 4311.718 kb on - strand, within BPHYT_RS19205 at 4311.844 kb on + strand, within BPHYT_RS19205 at 4312.000 kb on - strand at 4312.028 kb on - strand at 4312.046 kb on + strand at 4312.135 kb on - strand at 4312.151 kb on - strand at 4312.158 kb on + strand at 4312.229 kb on - strand at 4312.283 kb on - strand at 4312.310 kb on + strand at 4312.310 kb on + strand at 4312.311 kb on - strand at 4312.349 kb on + strand at 4312.350 kb on - strand at 4315.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 4,311,713 + BPHYT_RS19205 0.74 +0.3 4,311,714 - BPHYT_RS19205 0.74 -0.3 4,311,718 - BPHYT_RS19205 0.74 +1.2 4,311,844 + BPHYT_RS19205 0.84 -0.1 4,312,000 - +0.0 4,312,028 - +0.2 4,312,046 + -0.3 4,312,135 - -3.5 4,312,151 - +0.0 4,312,158 + -1.7 4,312,229 - -2.7 4,312,283 - +1.2 4,312,310 + -0.9 4,312,310 + -0.6 4,312,311 - +1.0 4,312,349 + -0.4 4,312,350 - +0.4 4,315,060 - +0.1
Or see this region's nucleotide sequence