Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17775 and BPHYT_RS17780 are separated by 72 nucleotides BPHYT_RS17780 and BPHYT_RS17785 are separated by 81 nucleotides BPHYT_RS17785 and BPHYT_RS17790 are separated by 721 nucleotides
BPHYT_RS17775: BPHYT_RS17775 - thiazole synthase, at 4,011,804 to 4,012,619
_RS17775
BPHYT_RS17780: BPHYT_RS17780 - sulfur carrier protein ThiS, at 4,012,692 to 4,012,889
_RS17780
BPHYT_RS17785: BPHYT_RS17785 - cytochrome C biogenesis protein CcdA, at 4,012,971 to 4,014,101
_RS17785
BPHYT_RS17790: BPHYT_RS17790 - ABC transporter ATP-binding protein, at 4,014,823 to 4,016,574
_RS17790
Position (kb)
4012
4013
4014
4015 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4012.626 kb on - strand at 4012.626 kb on - strand at 4014.182 kb on - strand at 4014.182 kb on - strand at 4014.182 kb on - strand at 4014.182 kb on - strand at 4014.182 kb on - strand at 4014.193 kb on - strand at 4014.450 kb on - strand at 4014.450 kb on - strand at 4014.450 kb on - strand at 4014.457 kb on - strand at 4014.457 kb on - strand at 4014.457 kb on - strand at 4014.529 kb on + strand at 4014.735 kb on + strand at 4014.808 kb on + strand at 4014.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 4,012,626 - -0.1 4,012,626 - -3.1 4,014,182 - +0.4 4,014,182 - -1.2 4,014,182 - -0.5 4,014,182 - -0.1 4,014,182 - -1.2 4,014,193 - -0.1 4,014,450 - +0.8 4,014,450 - -1.2 4,014,450 - -0.5 4,014,457 - -1.4 4,014,457 - -2.5 4,014,457 - -0.6 4,014,529 + +0.3 4,014,735 + +0.7 4,014,808 + +0.4 4,014,808 + +0.8
Or see this region's nucleotide sequence