Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17785

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17775 and BPHYT_RS17780 are separated by 72 nucleotidesBPHYT_RS17780 and BPHYT_RS17785 are separated by 81 nucleotidesBPHYT_RS17785 and BPHYT_RS17790 are separated by 721 nucleotides BPHYT_RS17775: BPHYT_RS17775 - thiazole synthase, at 4,011,804 to 4,012,619 _RS17775 BPHYT_RS17780: BPHYT_RS17780 - sulfur carrier protein ThiS, at 4,012,692 to 4,012,889 _RS17780 BPHYT_RS17785: BPHYT_RS17785 - cytochrome C biogenesis protein CcdA, at 4,012,971 to 4,014,101 _RS17785 BPHYT_RS17790: BPHYT_RS17790 - ABC transporter ATP-binding protein, at 4,014,823 to 4,016,574 _RS17790 Position (kb) 4012 4013 4014 4015Strain fitness (log2 ratio) -3 -2 -1 0 1at 4012.626 kb on - strandat 4012.626 kb on - strandat 4014.182 kb on - strandat 4014.182 kb on - strandat 4014.182 kb on - strandat 4014.182 kb on - strandat 4014.182 kb on - strandat 4014.193 kb on - strandat 4014.450 kb on - strandat 4014.450 kb on - strandat 4014.450 kb on - strandat 4014.457 kb on - strandat 4014.457 kb on - strandat 4014.457 kb on - strandat 4014.529 kb on + strandat 4014.735 kb on + strandat 4014.808 kb on + strandat 4014.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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4,012,626 - -0.1
4,012,626 - -3.1
4,014,182 - +0.4
4,014,182 - -1.2
4,014,182 - -0.5
4,014,182 - -0.1
4,014,182 - -1.2
4,014,193 - -0.1
4,014,450 - +0.8
4,014,450 - -1.2
4,014,450 - -0.5
4,014,457 - -1.4
4,014,457 - -2.5
4,014,457 - -0.6
4,014,529 + +0.3
4,014,735 + +0.7
4,014,808 + +0.4
4,014,808 + +0.8

Or see this region's nucleotide sequence