Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10545

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10540 and BPHYT_RS10545 are separated by 278 nucleotidesBPHYT_RS10545 and BPHYT_RS10550 are separated by 261 nucleotidesBPHYT_RS10550 and BPHYT_RS10555 are separated by 326 nucleotides BPHYT_RS10540: BPHYT_RS10540 - secretion protein, at 2,400,979 to 2,402,520 _RS10540 BPHYT_RS10545: BPHYT_RS10545 - fructose-1,6-bisphosphate aldolase, at 2,402,799 to 2,403,695 _RS10545 BPHYT_RS10550: BPHYT_RS10550 - hypothetical protein, at 2,403,957 to 2,404,220 _RS10550 BPHYT_RS10555: BPHYT_RS10555 - integral membrane sensor hybrid histidine kinase, at 2,404,547 to 2,406,484 _RS10555 Position (kb) 2402 2403 2404Strain fitness (log2 ratio) -1 0 1at 2403.669 kb on + strandat 2403.820 kb on + strandat 2403.841 kb on + strandat 2403.841 kb on + strandat 2404.518 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,403,669 + -0.3
2,403,820 + -0.7
2,403,841 + -0.1
2,403,841 + -1.0
2,404,518 + -0.7

Or see this region's nucleotide sequence