Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10460

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10450 and BPHYT_RS10455 are separated by 150 nucleotidesBPHYT_RS10455 and BPHYT_RS10460 are separated by 270 nucleotidesBPHYT_RS10460 and BPHYT_RS10465 are separated by 482 nucleotides BPHYT_RS10450: BPHYT_RS10450 - prolyl-tRNA synthetase, at 2,375,828 to 2,376,970 _RS10450 BPHYT_RS10455: BPHYT_RS10455 - hypothetical protein, at 2,377,121 to 2,377,450 _RS10455 BPHYT_RS10460: BPHYT_RS10460 - endoribonuclease, at 2,377,721 to 2,378,164 _RS10460 BPHYT_RS10465: BPHYT_RS10465 - hypothetical protein, at 2,378,647 to 2,380,101 _RS10465 Position (kb) 2377 2378 2379Strain fitness (log2 ratio) -1 0 1at 2377.998 kb on - strand, within BPHYT_RS10460

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,377,998 - BPHYT_RS10460 0.62 +1.4

Or see this region's nucleotide sequence