Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24745 and AO356_24750 are separated by 227 nucleotides AO356_24750 and AO356_24755 overlap by 4 nucleotides AO356_24755 and AO356_24760 are separated by 117 nucleotides
AO356_24745: AO356_24745 - iron dicitrate transport regulator FecR, at 5,597,379 to 5,598,320
_24745
AO356_24750: AO356_24750 - type II secretion system protein GspJ, at 5,598,548 to 5,599,159
_24750
AO356_24755: AO356_24755 - type II secretion system protein GspH, at 5,599,156 to 5,599,608
_24755
AO356_24760: AO356_24760 - general secretion pathway protein GspC, at 5,599,726 to 5,600,196
_24760
Position (kb) 5598
5599
5600 Strain fitness (log2 ratio) -1
0
1 at 5597.712 kb on + strand, within AO356_24745 at 5597.712 kb on + strand, within AO356_24745 at 5598.036 kb on + strand, within AO356_24745 at 5598.036 kb on + strand, within AO356_24745 at 5598.492 kb on + strand at 5598.493 kb on - strand at 5598.550 kb on - strand at 5598.577 kb on - strand at 5599.414 kb on - strand, within AO356_24755 at 5599.687 kb on + strand at 5599.687 kb on + strand at 5599.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 5,597,712 + AO356_24745 0.35 +0.2 5,597,712 + AO356_24745 0.35 -1.3 5,598,036 + AO356_24745 0.70 -0.8 5,598,036 + AO356_24745 0.70 -1.1 5,598,492 + -0.1 5,598,493 - -0.5 5,598,550 - +0.3 5,598,577 - +0.1 5,599,414 - AO356_24755 0.57 +0.4 5,599,687 + -0.7 5,599,687 + +0.4 5,599,688 - +0.7
Or see this region's nucleotide sequence