Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21780 and AO356_21785 are separated by 128 nucleotides AO356_21785 and AO356_21790 overlap by 1 nucleotides AO356_21790 and AO356_21795 overlap by 4 nucleotides
AO356_21780: AO356_21780 - nitrate ABC transporter substrate-binding protein, at 4,875,231 to 4,876,637
_21780
AO356_21785: AO356_21785 - ABC transporter permease, at 4,876,766 to 4,877,548
_21785
AO356_21790: AO356_21790 - sulfonate ABC transporter ATP-binding protein, at 4,877,548 to 4,878,396
_21790
AO356_21795: AO356_21795 - PBS lyase, at 4,878,393 to 4,879,355
_21795
Position (kb) 4876
4877
4878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4875.877 kb on - strand, within AO356_21780 at 4875.933 kb on + strand, within AO356_21780 at 4875.933 kb on + strand, within AO356_21780 at 4875.933 kb on + strand, within AO356_21780 at 4875.934 kb on - strand, within AO356_21780 at 4875.934 kb on - strand, within AO356_21780 at 4876.020 kb on + strand, within AO356_21780 at 4876.021 kb on - strand, within AO356_21780 at 4876.021 kb on - strand, within AO356_21780 at 4876.021 kb on - strand, within AO356_21780 at 4876.068 kb on + strand, within AO356_21780 at 4876.068 kb on + strand, within AO356_21780 at 4876.069 kb on - strand, within AO356_21780 at 4876.199 kb on + strand, within AO356_21780 at 4876.200 kb on - strand, within AO356_21780 at 4876.200 kb on - strand, within AO356_21780 at 4876.219 kb on - strand, within AO356_21780 at 4876.254 kb on + strand, within AO356_21780 at 4876.272 kb on - strand, within AO356_21780 at 4876.275 kb on + strand, within AO356_21780 at 4876.275 kb on + strand, within AO356_21780 at 4876.275 kb on + strand, within AO356_21780 at 4876.275 kb on + strand, within AO356_21780 at 4876.276 kb on - strand, within AO356_21780 at 4876.276 kb on - strand, within AO356_21780 at 4876.276 kb on - strand, within AO356_21780 at 4876.384 kb on - strand, within AO356_21780 at 4876.455 kb on + strand, within AO356_21780 at 4876.456 kb on - strand, within AO356_21780 at 4876.456 kb on - strand, within AO356_21780 at 4877.199 kb on + strand, within AO356_21785 at 4877.199 kb on + strand, within AO356_21785 at 4877.199 kb on + strand, within AO356_21785 at 4877.200 kb on - strand, within AO356_21785 at 4877.399 kb on + strand, within AO356_21785 at 4877.399 kb on + strand, within AO356_21785 at 4877.399 kb on + strand, within AO356_21785 at 4877.399 kb on + strand, within AO356_21785 at 4877.400 kb on - strand, within AO356_21785 at 4877.400 kb on - strand, within AO356_21785 at 4877.415 kb on - strand, within AO356_21785 at 4877.430 kb on - strand, within AO356_21785 at 4878.084 kb on + strand, within AO356_21790 at 4878.085 kb on - strand, within AO356_21790 at 4878.085 kb on - strand, within AO356_21790 at 4878.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,875,877 - AO356_21780 0.46 -0.9 4,875,933 + AO356_21780 0.50 +0.9 4,875,933 + AO356_21780 0.50 +0.4 4,875,933 + AO356_21780 0.50 +1.0 4,875,934 - AO356_21780 0.50 -0.4 4,875,934 - AO356_21780 0.50 +1.0 4,876,020 + AO356_21780 0.56 +0.6 4,876,021 - AO356_21780 0.56 -0.1 4,876,021 - AO356_21780 0.56 -0.3 4,876,021 - AO356_21780 0.56 +1.0 4,876,068 + AO356_21780 0.59 +0.4 4,876,068 + AO356_21780 0.59 +0.0 4,876,069 - AO356_21780 0.60 +0.3 4,876,199 + AO356_21780 0.69 -0.2 4,876,200 - AO356_21780 0.69 -0.3 4,876,200 - AO356_21780 0.69 -0.5 4,876,219 - AO356_21780 0.70 +0.3 4,876,254 + AO356_21780 0.73 -0.2 4,876,272 - AO356_21780 0.74 -0.0 4,876,275 + AO356_21780 0.74 -0.2 4,876,275 + AO356_21780 0.74 +0.1 4,876,275 + AO356_21780 0.74 +0.0 4,876,275 + AO356_21780 0.74 -0.9 4,876,276 - AO356_21780 0.74 +0.2 4,876,276 - AO356_21780 0.74 -1.3 4,876,276 - AO356_21780 0.74 -0.2 4,876,384 - AO356_21780 0.82 +0.0 4,876,455 + AO356_21780 0.87 -0.5 4,876,456 - AO356_21780 0.87 +0.3 4,876,456 - AO356_21780 0.87 -0.3 4,877,199 + AO356_21785 0.55 +2.0 4,877,199 + AO356_21785 0.55 +0.3 4,877,199 + AO356_21785 0.55 -0.5 4,877,200 - AO356_21785 0.55 -0.4 4,877,399 + AO356_21785 0.81 +0.3 4,877,399 + AO356_21785 0.81 +0.3 4,877,399 + AO356_21785 0.81 -0.6 4,877,399 + AO356_21785 0.81 -0.6 4,877,400 - AO356_21785 0.81 -0.1 4,877,400 - AO356_21785 0.81 +0.5 4,877,415 - AO356_21785 0.83 -0.8 4,877,430 - AO356_21785 0.85 -0.9 4,878,084 + AO356_21790 0.63 -1.8 4,878,085 - AO356_21790 0.63 -1.1 4,878,085 - AO356_21790 0.63 -1.1 4,878,404 - +0.5
Or see this region's nucleotide sequence