Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003674

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
4,130,759	+		ABIE53_003673	0.40	+0.4
4,130,759	+		ABIE53_003673	0.40	+0.3
4,130,759	+		ABIE53_003673	0.40	-1.6
4,130,759	+		ABIE53_003673	0.40	+1.6
4,130,760	-		ABIE53_003673	0.40	+2.8
4,130,760	-		ABIE53_003673	0.40	+0.3
4,130,760	-		ABIE53_003673	0.40	-0.2
4,131,020	+		ABIE53_003673	0.61	-0.7
4,131,020	+		ABIE53_003673	0.61	-0.7
4,131,020	+		ABIE53_003673	0.61	-0.5
4,131,020	+		ABIE53_003673	0.61	+0.5
4,131,021	-		ABIE53_003673	0.61	-0.5
4,131,021	-		ABIE53_003673	0.61	+0.1
4,131,021	-		ABIE53_003673	0.61	+0.4
4,131,021	-		ABIE53_003673	0.61	-1.2
4,131,021	-		ABIE53_003673	0.61	+0.6
4,131,090	+		ABIE53_003673	0.66	+0.3
4,131,090	+		ABIE53_003673	0.66	+1.3
4,131,090	+		ABIE53_003673	0.66	+0.1
4,131,090	+		ABIE53_003673	0.66	+0.1
4,131,091	-		ABIE53_003673	0.66	-0.2
4,131,332	+		ABIE53_003673	0.85	-0.3
4,131,332	+		ABIE53_003673	0.85	+0.8
4,131,332	+		ABIE53_003673	0.85	+0.8
4,131,332	+		ABIE53_003673	0.85	+1.8
4,131,332	+		ABIE53_003673	0.85	-1.2
4,131,332	+		ABIE53_003673	0.85	-1.0
4,131,332	+		ABIE53_003673	0.85	+1.0
4,131,333	-		ABIE53_003673	0.85	-0.7
4,131,486	-				-0.9
4,131,502	+				-0.7
4,131,503	-				-0.2
4,131,503	-				-0.1
4,131,503	-				+1.0
4,131,503	-				+0.3
4,131,503	-				-0.8
4,131,503	-				-0.2
4,131,503	-				-2.6
4,131,535	+				-0.2
4,131,535	+				+0.2
4,131,535	+				-0.1
4,131,536	-				+0.1
4,131,574	+				-2.0
4,131,574	+				-0.8
4,131,575	-				+1.4
4,131,575	-				+0.5
4,131,575	-				+0.6
4,131,577	+				+0.1
4,131,577	+				-1.5
4,131,577	+				-0.1
4,131,577	+				-0.2
4,131,577	+				-0.2
4,131,577	+				+0.0
4,131,577	+				-0.2
4,131,577	+				-1.2
4,131,577	+				+0.1
4,131,578	-				+0.1
4,131,578	-				+0.4
4,131,578	-				+1.4
4,131,578	-				-0.2
4,131,578	-				-0.1
4,131,578	-				+0.8
4,131,578	-				-1.0
4,131,578	-				-1.2
4,131,578	-				+0.6
4,131,580	+				-1.3
4,131,580	+				+0.1
4,131,580	+				+0.6
4,131,580	+				-0.5
4,131,580	+				+0.1
4,131,580	+				-1.3
4,131,580	+				+2.4
4,131,580	+				-1.2
4,131,580	+				-0.3
4,131,581	-				+0.2
4,131,581	-				-1.9
4,131,581	-				-0.0
4,131,581	-				-0.4
4,131,581	-				-0.6
4,131,581	-				-0.5
4,131,581	-				+1.1
4,131,581	-				+0.1
4,131,700	+				+0.8
4,131,700	+				+0.8
4,131,700	+				-2.3
4,131,701	-				-2.3
4,131,701	-				-1.3
4,131,701	-				-0.7
4,131,821	+		ABIE53_003674	0.20	-1.2
4,131,893	+		ABIE53_003674	0.31	-1.3
4,131,894	-		ABIE53_003674	0.31	-1.4
4,131,932	+		ABIE53_003674	0.37	-0.4
4,131,932	+		ABIE53_003674	0.37	-1.4
4,131,933	-		ABIE53_003674	0.37	-1.5
4,131,965	+		ABIE53_003674	0.42	-2.5
4,132,022	+		ABIE53_003674	0.50	-1.0
4,132,022	+		ABIE53_003674	0.50	-0.5
4,132,244	+		ABIE53_003674	0.84	-2.1
4,132,244	+		ABIE53_003674	0.84	-0.7
4,132,244	+		ABIE53_003674	0.84	+0.5
4,132,262	+		ABIE53_003674	0.86	-0.3
4,132,262	+		ABIE53_003674	0.86	-0.3
4,132,262	+		ABIE53_003674	0.86	-2.5
4,132,262	+		ABIE53_003674	0.86	+1.6
4,132,263	-		ABIE53_003674	0.87	-1.7
4,132,312	-				+0.8
4,132,349	+				+0.6
4,132,349	+				+0.8
4,132,349	+				-0.2
4,132,349	+				+0.3
4,132,349	+				-0.5
4,132,349	+				+0.3
4,132,350	-				+1.3
4,132,350	-				+1.2
4,132,350	-				+1.2
4,132,350	-				+1.4
4,132,350	-				+0.3
4,132,350	-				-0.6
4,132,350	-				-1.0
4,132,414	-		ABIE53_003675	0.13	+0.1
4,132,598	+		ABIE53_003675	0.40	-0.2
4,132,598	+		ABIE53_003675	0.40	-0.0
4,132,646	+		ABIE53_003675	0.47	-0.9
4,132,646	+		ABIE53_003675	0.47	+1.8
4,132,646	+		ABIE53_003675	0.47	+0.7
4,132,647	-		ABIE53_003675	0.47	-0.6
4,132,647	-		ABIE53_003675	0.47	+0.6
4,132,685	+		ABIE53_003675	0.53	+0.0
4,132,685	+		ABIE53_003675	0.53	-0.5
4,132,686	-		ABIE53_003675	0.53	+0.2
4,132,721	-		ABIE53_003675	0.58	-0.0
4,132,721	-		ABIE53_003675	0.58	-0.5
4,132,721	-		ABIE53_003675	0.58	-0.0
4,132,733	+		ABIE53_003675	0.60	+1.1
4,132,807	+		ABIE53_003675	0.70	+0.7
4,132,807	+		ABIE53_003675	0.70	-1.5
4,132,807	+		ABIE53_003675	0.70	+1.3
4,132,807	+		ABIE53_003675	0.70	+0.8
4,132,807	+		ABIE53_003675	0.70	+0.6
4,132,808	-		ABIE53_003675	0.71	+0.0
4,132,808	-		ABIE53_003675	0.71	-0.5
4,132,846	+		ABIE53_003675	0.76	+0.3
4,132,846	+		ABIE53_003675	0.76	+0.3
4,132,847	-		ABIE53_003675	0.76	-0.3
4,132,881	-		ABIE53_003675	0.81	+0.8
4,132,881	-		ABIE53_003675	0.81	+0.0
4,132,896	+		ABIE53_003675	0.84	-0.1
4,132,896	+		ABIE53_003675	0.84	+0.8
4,132,896	+		ABIE53_003675	0.84	-0.3
4,132,896	+		ABIE53_003675	0.84	+0.1
4,132,896	+		ABIE53_003675	0.84	+0.3
4,132,897	-		ABIE53_003675	0.84	+0.1
4,132,897	-		ABIE53_003675	0.84	+0.8
4,132,940	-				+0.8
4,133,166	-		ABIE53_003676	0.19	+0.4
4,133,192	+		ABIE53_003676	0.22	-0.2
4,133,193	-		ABIE53_003676	0.22	-1.0
4,133,193	-		ABIE53_003676	0.22	+0.6
4,133,193	-		ABIE53_003676	0.22	+0.8
4,133,219	-		ABIE53_003676	0.25	+0.8
4,133,242	+		ABIE53_003676	0.28	-0.4
4,133,242	+		ABIE53_003676	0.28	+0.8
4,133,243	-		ABIE53_003676	0.28	-0.7
4,133,306	+		ABIE53_003676	0.35	+1.8
4,133,307	-		ABIE53_003676	0.35	+2.6