Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002536

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,858,830	+		ABIE53_002535	0.72	-0.0
2,858,857	+		ABIE53_002535	0.74	+0.7
2,858,857	+		ABIE53_002535	0.74	+1.9
2,858,858	-		ABIE53_002535	0.74	-0.2
2,858,994	-		ABIE53_002535	0.82	-0.9
2,859,075	+		ABIE53_002535	0.87	-1.2
2,859,202	+				-0.5
2,859,274	+				-0.2
2,859,274	+				-0.8
2,859,274	+				-0.1
2,859,279	+				-0.4
2,859,279	+				-2.0
2,859,279	+				+1.6
2,859,279	+				+2.2
2,859,279	+				-0.4
2,859,279	+				-0.1
2,859,279	+				+0.1
2,859,279	+				-0.9
2,859,279	+				-0.2
2,859,280	-				-1.2
2,859,280	-				-1.4
2,859,289	+				-1.0
2,859,289	+				+0.7
2,859,290	-				+0.2
2,859,290	-				+0.1
2,859,300	+				-0.2
2,859,301	-				+2.2
2,859,301	-				-0.4
2,859,517	+				-0.4
2,859,602	-				-1.2
2,859,602	-				-4.2
2,859,602	-				-0.8
2,859,602	-				-1.4
2,859,604	-				-2.1
2,859,629	+				-2.7
2,859,629	+				-0.2
2,859,630	-				-2.1
2,859,630	-				-1.8
2,859,688	-				-1.0
2,859,688	-				-2.9
2,859,789	+				-0.4
2,859,789	+				-1.6
2,859,789	+				-1.6
2,859,789	+				-1.9
2,859,789	+				-2.4
2,859,789	+				-0.6
2,859,789	+				-0.8
2,859,789	+				-3.4
2,859,790	-				-0.0
2,859,790	-				-4.6
2,859,790	-				-2.0
2,859,790	-				-2.9
2,859,790	-				-2.7
2,859,790	-				-4.1
2,859,790	-				-2.5
2,859,790	-				-2.6
2,859,790	-				-2.7
2,859,791	+				-1.4
2,859,876	-		ABIE53_002536	0.13	-3.1
2,859,966	+		ABIE53_002536	0.20	-2.3
2,859,966	+		ABIE53_002536	0.20	-2.2
2,859,966	+		ABIE53_002536	0.20	-2.5
2,859,966	+		ABIE53_002536	0.20	-0.0
2,859,966	+		ABIE53_002536	0.20	-3.0
2,859,966	+		ABIE53_002536	0.20	-0.4
2,859,966	+		ABIE53_002536	0.20	-2.1
2,859,966	+		ABIE53_002536	0.20	-2.1
2,859,966	+		ABIE53_002536	0.20	-3.5
2,859,966	+		ABIE53_002536	0.20	-1.8
2,859,966	+		ABIE53_002536	0.20	-1.6
2,859,966	+		ABIE53_002536	0.20	-0.8
2,859,966	+		ABIE53_002536	0.20	-2.0
2,859,966	+		ABIE53_002536	0.20	-4.0
2,859,966	+		ABIE53_002536	0.20	-0.8
2,859,967	-		ABIE53_002536	0.20	-1.3
2,859,967	-		ABIE53_002536	0.20	-0.0
2,859,967	-		ABIE53_002536	0.20	-1.8
2,859,967	-		ABIE53_002536	0.20	-0.4
2,859,967	-		ABIE53_002536	0.20	-3.6
2,859,967	-		ABIE53_002536	0.20	-1.6
2,859,967	-		ABIE53_002536	0.20	-3.4
2,859,967	-		ABIE53_002536	0.20	-2.8
2,859,967	-		ABIE53_002536	0.20	-3.0
2,859,967	-		ABIE53_002536	0.20	-2.2
2,860,017	+		ABIE53_002536	0.24	-2.9
2,860,017	+		ABIE53_002536	0.24	-1.4
2,860,017	+		ABIE53_002536	0.24	-1.2
2,860,018	-		ABIE53_002536	0.24	+1.6
2,860,018	-		ABIE53_002536	0.24	-2.0
2,860,076	+		ABIE53_002536	0.28	-3.5
2,860,076	+		ABIE53_002536	0.28	-2.3
2,860,077	-		ABIE53_002536	0.28	-3.7
2,860,077	-		ABIE53_002536	0.28	+1.1
2,860,077	-		ABIE53_002536	0.28	-4.6
2,860,141	-		ABIE53_002536	0.33	-2.7
2,860,141	-		ABIE53_002536	0.33	+0.6
2,860,141	-		ABIE53_002536	0.33	-4.1
2,860,141	-		ABIE53_002536	0.33	-4.0
2,860,141	-		ABIE53_002536	0.33	-3.1
2,860,142	+		ABIE53_002536	0.33	-1.4
2,860,143	-		ABIE53_002536	0.33	-1.4
2,860,143	-		ABIE53_002536	0.33	-2.0
2,860,143	-		ABIE53_002536	0.33	-1.4
2,860,149	+		ABIE53_002536	0.34	-5.4
2,860,149	+		ABIE53_002536	0.34	-2.0
2,860,150	-		ABIE53_002536	0.34	-0.8
2,860,488	+		ABIE53_002536	0.60	-1.4
2,860,536	+		ABIE53_002536	0.63	-2.7
2,860,647	+		ABIE53_002536	0.72	-2.1
2,860,647	+		ABIE53_002536	0.72	-2.8
2,860,648	-		ABIE53_002536	0.72	-2.4
2,860,648	-		ABIE53_002536	0.72	-5.4
2,860,648	-		ABIE53_002536	0.72	-3.8
2,860,648	-		ABIE53_002536	0.72	+1.6
2,860,648	-		ABIE53_002536	0.72	-3.0
2,860,734	+		ABIE53_002536	0.78	-2.4
2,860,734	+		ABIE53_002536	0.78	-1.8
2,860,734	+		ABIE53_002536	0.78	-0.4
2,860,735	-		ABIE53_002536	0.79	-2.5
2,860,735	-		ABIE53_002536	0.79	-0.0
2,860,735	-		ABIE53_002536	0.79	-2.9
2,860,735	-		ABIE53_002536	0.79	-4.2
2,860,780	-		ABIE53_002536	0.82	-2.8
2,860,780	-		ABIE53_002536	0.82	-2.3
2,860,780	-		ABIE53_002536	0.82	-0.4
2,860,780	-		ABIE53_002536	0.82	-1.6
2,860,780	-		ABIE53_002536	0.82	-2.8
2,860,780	-		ABIE53_002536	0.82	-2.3
2,860,780	-		ABIE53_002536	0.82	-2.1
2,860,915	-				-1.0
2,861,052	+				-1.4
2,861,052	+				-0.4
2,861,053	-				-1.3
2,861,053	-				+0.6
2,861,053	-				+0.5
2,861,053	-				-0.4
2,861,053	-				-0.8
2,861,179	+				-0.7
2,861,180	-				+0.6
2,861,328	+				+0.4
2,861,328	+				-0.7
2,861,328	+				-0.0
2,861,328	+				+1.0
2,861,329	-				+0.1
2,861,356	+				+1.8
2,861,356	+				-0.3
2,861,356	+				+3.1
2,861,357	-				-0.2
2,861,357	-				-1.1
2,861,357	-				+1.2
2,861,500	+		ABIE53_002537	0.35	+0.6
2,861,659	+		ABIE53_002537	0.71	-1.1
2,861,659	+		ABIE53_002537	0.71	+0.6
2,861,660	-		ABIE53_002537	0.71	+0.8
2,861,660	-		ABIE53_002537	0.71	+0.4
2,861,677	+		ABIE53_002537	0.75	+0.8
2,861,677	+		ABIE53_002537	0.75	+0.6
2,861,685	-		ABIE53_002537	0.77	-0.8
2,861,685	-		ABIE53_002537	0.77	+0.6
2,861,685	-		ABIE53_002537	0.77	+1.6
2,861,685	-		ABIE53_002537	0.77	-1.2
2,861,872	+				-1.6
2,861,873	-				-0.8
2,861,873	-				-1.3
2,861,884	+				-0.6
2,861,884	+				-1.1
2,861,884	+				-1.3
2,861,884	+				+0.6
2,861,884	+				+0.7
2,861,885	-				+1.8
2,861,885	-				-1.2
2,861,912	+				+0.9
2,861,912	+				-0.0
2,861,912	+				-0.3
2,861,912	+				-0.2
2,861,913	-				-0.3
2,861,913	-				+0.6
2,861,913	-				+2.0
2,861,913	-				+2.0
2,861,965	-				+0.8
2,861,965	-				+0.8
2,861,965	-				-1.8
2,861,979	+				-2.3
2,861,979	+				-0.1
2,861,979	+				+1.4
2,861,979	+				-1.4
2,861,979	+				+0.7
2,861,979	+				+1.6
2,861,980	-				-1.7
2,861,980	-				-1.2
2,861,980	-				-2.5
2,861,980	-				-1.4
2,861,980	-				+0.6
2,861,980	-				-0.4
2,861,980	-				-1.4
2,861,980	-				-0.6
2,861,980	-				-1.8
2,861,980	-				-2.4
2,861,983	+				+1.6
2,861,983	+				+0.1
2,861,983	+				+0.0
2,861,983	+				-0.0
2,861,983	+				-0.3
2,861,983	+				-0.9
2,861,983	+				-0.2
2,861,983	+				+1.6
2,861,983	+				+0.4
2,861,983	+				-0.6
2,861,983	+				-1.1
2,861,983	+				-0.8
2,861,983	+				-0.1
2,861,983	+				-0.5
2,861,983	+				-1.8
2,861,983	+				-0.3
2,861,983	+				-0.0
2,861,983	+				-1.1
2,861,983	+				-1.1
2,861,983	+				+0.2
2,861,983	+				+1.4
2,861,984	-				-2.3
2,861,984	-				+1.1
2,861,984	-				+2.1
2,861,984	-				-1.9
2,861,984	-				+0.3
2,861,984	-				+0.1
2,861,984	-				-0.2
2,861,984	-				-1.4
2,861,984	-				+1.6
2,861,984	-				-0.9
2,861,984	-				-0.9
2,861,984	-				-0.0
2,861,984	-				-0.5
2,861,984	-				-1.2
2,861,984	-				+0.1
2,861,984	-				-0.8
2,861,984	-				-0.8
2,861,984	-				+0.2
2,861,984	-				-0.6
2,861,984	-				-0.0
2,861,984	-				+0.1
2,861,984	-				-2.6
2,861,984	-				-0.1
2,861,984	-				+0.7
2,861,984	-				-0.3
2,861,984	-				-0.1
2,861,984	-				+0.8
2,861,984	-				+0.2