Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000237

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000236 and ABIE53_000237 are separated by 71 nucleotidesABIE53_000237 and ABIE53_000238 are separated by 70 nucleotides ABIE53_000236: ABIE53_000236 - aminomethyltransferase, at 244,015 to 245,133 _000236 ABIE53_000237: ABIE53_000237 - glycine cleavage system H protein, at 245,205 to 245,585 _000237 ABIE53_000238: ABIE53_000238 - glycine dehydrogenase, at 245,656 to 248,592 _000238 Position (kb) 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 244.222 kb on + strand, within ABIE53_000236at 244.273 kb on + strand, within ABIE53_000236at 244.273 kb on + strand, within ABIE53_000236at 244.273 kb on + strand, within ABIE53_000236at 244.274 kb on - strand, within ABIE53_000236at 244.274 kb on - strand, within ABIE53_000236at 244.274 kb on - strand, within ABIE53_000236at 244.274 kb on - strand, within ABIE53_000236at 244.324 kb on + strand, within ABIE53_000236at 244.324 kb on + strand, within ABIE53_000236at 244.325 kb on - strand, within ABIE53_000236at 244.325 kb on - strand, within ABIE53_000236at 244.325 kb on - strand, within ABIE53_000236at 244.327 kb on + strand, within ABIE53_000236at 244.327 kb on + strand, within ABIE53_000236at 244.327 kb on + strand, within ABIE53_000236at 244.328 kb on - strand, within ABIE53_000236at 244.328 kb on - strand, within ABIE53_000236at 244.328 kb on - strand, within ABIE53_000236at 244.328 kb on - strand, within ABIE53_000236at 244.328 kb on - strand, within ABIE53_000236at 244.600 kb on + strand, within ABIE53_000236at 244.600 kb on + strand, within ABIE53_000236at 244.600 kb on + strand, within ABIE53_000236at 244.601 kb on - strand, within ABIE53_000236at 244.742 kb on - strand, within ABIE53_000236at 244.742 kb on - strand, within ABIE53_000236at 245.087 kb on + strandat 245.087 kb on + strandat 245.088 kb on - strandat 245.088 kb on - strandat 245.166 kb on - strandat 245.176 kb on + strandat 245.193 kb on + strandat 245.193 kb on + strandat 245.193 kb on + strandat 245.193 kb on + strandat 245.193 kb on + strandat 245.193 kb on + strandat 245.193 kb on + strandat 245.193 kb on + strandat 245.193 kb on + strandat 245.194 kb on - strandat 245.194 kb on - strandat 245.194 kb on - strandat 245.194 kb on - strandat 245.194 kb on - strandat 245.194 kb on - strandat 245.194 kb on - strandat 245.194 kb on - strandat 245.194 kb on - strandat 245.229 kb on + strandat 245.229 kb on + strandat 245.230 kb on - strandat 245.230 kb on - strandat 245.230 kb on - strandat 245.230 kb on - strandat 245.288 kb on + strand, within ABIE53_000237at 245.289 kb on - strand, within ABIE53_000237at 245.289 kb on - strand, within ABIE53_000237at 245.412 kb on + strand, within ABIE53_000237at 245.412 kb on + strand, within ABIE53_000237at 245.412 kb on + strand, within ABIE53_000237at 245.412 kb on + strand, within ABIE53_000237at 245.413 kb on - strand, within ABIE53_000237at 245.413 kb on - strand, within ABIE53_000237at 245.491 kb on - strand, within ABIE53_000237at 245.491 kb on - strand, within ABIE53_000237at 245.562 kb on + strandat 245.562 kb on + strandat 245.562 kb on + strandat 245.562 kb on + strandat 245.562 kb on + strandat 245.563 kb on - strandat 245.563 kb on - strandat 245.563 kb on - strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.600 kb on - strandat 245.950 kb on + strand, within ABIE53_000238at 245.950 kb on + strand, within ABIE53_000238at 245.950 kb on + strand, within ABIE53_000238at 245.950 kb on + strand, within ABIE53_000238at 245.950 kb on + strand, within ABIE53_000238at 245.950 kb on + strand, within ABIE53_000238at 245.951 kb on - strand, within ABIE53_000238at 245.951 kb on - strand, within ABIE53_000238at 245.951 kb on - strand, within ABIE53_000238at 245.951 kb on - strand, within ABIE53_000238at 245.965 kb on + strand, within ABIE53_000238at 245.965 kb on + strand, within ABIE53_000238at 245.966 kb on - strand, within ABIE53_000238at 245.966 kb on - strand, within ABIE53_000238at 245.966 kb on - strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.968 kb on + strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 245.969 kb on - strand, within ABIE53_000238at 246.025 kb on + strand, within ABIE53_000238at 246.025 kb on + strand, within ABIE53_000238at 246.026 kb on - strand, within ABIE53_000238at 246.026 kb on - strand, within ABIE53_000238at 246.026 kb on - strand, within ABIE53_000238at 246.026 kb on - strand, within ABIE53_000238at 246.034 kb on + strand, within ABIE53_000238at 246.034 kb on + strand, within ABIE53_000238at 246.034 kb on + strand, within ABIE53_000238at 246.034 kb on + strand, within ABIE53_000238at 246.034 kb on + strand, within ABIE53_000238at 246.034 kb on + strand, within ABIE53_000238at 246.035 kb on - strand, within ABIE53_000238at 246.035 kb on - strand, within ABIE53_000238at 246.035 kb on - strand, within ABIE53_000238at 246.035 kb on - strand, within ABIE53_000238at 246.043 kb on + strand, within ABIE53_000238at 246.043 kb on + strand, within ABIE53_000238at 246.216 kb on - strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.217 kb on + strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.218 kb on - strand, within ABIE53_000238at 246.257 kb on + strand, within ABIE53_000238at 246.379 kb on + strand, within ABIE53_000238at 246.380 kb on - strand, within ABIE53_000238at 246.550 kb on + strand, within ABIE53_000238at 246.550 kb on + strand, within ABIE53_000238at 246.551 kb on - strand, within ABIE53_000238at 246.551 kb on - strand, within ABIE53_000238

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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244,222 + ABIE53_000236 0.18 -1.3
244,273 + ABIE53_000236 0.23 -0.4
244,273 + ABIE53_000236 0.23 -0.3
244,273 + ABIE53_000236 0.23 -1.9
244,274 - ABIE53_000236 0.23 -0.3
244,274 - ABIE53_000236 0.23 -2.5
244,274 - ABIE53_000236 0.23 +0.1
244,274 - ABIE53_000236 0.23 -1.3
244,324 + ABIE53_000236 0.28 -1.7
244,324 + ABIE53_000236 0.28 -1.7
244,325 - ABIE53_000236 0.28 -1.3
244,325 - ABIE53_000236 0.28 -1.9
244,325 - ABIE53_000236 0.28 +0.7
244,327 + ABIE53_000236 0.28 -1.3
244,327 + ABIE53_000236 0.28 +1.0
244,327 + ABIE53_000236 0.28 -0.6
244,328 - ABIE53_000236 0.28 -1.1
244,328 - ABIE53_000236 0.28 -2.5
244,328 - ABIE53_000236 0.28 +0.7
244,328 - ABIE53_000236 0.28 -1.5
244,328 - ABIE53_000236 0.28 -2.2
244,600 + ABIE53_000236 0.52 -3.3
244,600 + ABIE53_000236 0.52 -0.7
244,600 + ABIE53_000236 0.52 +0.7
244,601 - ABIE53_000236 0.52 -3.5
244,742 - ABIE53_000236 0.65 -1.5
244,742 - ABIE53_000236 0.65 -2.9
245,087 + -0.1
245,087 + +0.1
245,088 - -2.5
245,088 - -1.5
245,166 - -0.7
245,176 + +0.1
245,193 + -0.3
245,193 + +0.7
245,193 + +0.3
245,193 + +0.3
245,193 + +0.0
245,193 + -0.8
245,193 + -1.1
245,193 + -0.3
245,193 + -0.3
245,194 - -1.5
245,194 - -1.1
245,194 - -1.8
245,194 - -0.6
245,194 - +0.4
245,194 - +0.1
245,194 - -2.2
245,194 - -1.7
245,194 - -2.1
245,229 + -1.1
245,229 + -0.6
245,230 - -0.6
245,230 - +0.7
245,230 - -1.6
245,230 - -1.9
245,288 + ABIE53_000237 0.22 -2.3
245,289 - ABIE53_000237 0.22 -0.6
245,289 - ABIE53_000237 0.22 +1.7
245,412 + ABIE53_000237 0.54 +0.4
245,412 + ABIE53_000237 0.54 +1.7
245,412 + ABIE53_000237 0.54 -1.9
245,412 + ABIE53_000237 0.54 +0.7
245,413 - ABIE53_000237 0.55 -3.5
245,413 - ABIE53_000237 0.55 -0.3
245,491 - ABIE53_000237 0.75 -1.4
245,491 - ABIE53_000237 0.75 -0.9
245,562 + +0.1
245,562 + -0.6
245,562 + -0.5
245,562 + +1.0
245,562 + -0.2
245,563 - -0.6
245,563 - +0.0
245,563 - -2.4
245,599 + +1.7
245,599 + -0.2
245,600 - -2.1
245,950 + ABIE53_000238 0.10 +0.7
245,950 + ABIE53_000238 0.10 -0.9
245,950 + ABIE53_000238 0.10 -1.1
245,950 + ABIE53_000238 0.10 -0.2
245,950 + ABIE53_000238 0.10 -2.3
245,950 + ABIE53_000238 0.10 -1.0
245,951 - ABIE53_000238 0.10 -0.3
245,951 - ABIE53_000238 0.10 -0.6
245,951 - ABIE53_000238 0.10 -0.9
245,951 - ABIE53_000238 0.10 -0.3
245,965 + ABIE53_000238 0.11 +0.9
245,965 + ABIE53_000238 0.11 +0.1
245,966 - ABIE53_000238 0.11 +0.7
245,966 - ABIE53_000238 0.11 +1.7
245,966 - ABIE53_000238 0.11 +0.7
245,968 + ABIE53_000238 0.11 -1.7
245,968 + ABIE53_000238 0.11 -2.0
245,968 + ABIE53_000238 0.11 -0.5
245,968 + ABIE53_000238 0.11 -2.3
245,968 + ABIE53_000238 0.11 +0.1
245,968 + ABIE53_000238 0.11 -1.6
245,968 + ABIE53_000238 0.11 -0.3
245,968 + ABIE53_000238 0.11 -0.6
245,968 + ABIE53_000238 0.11 -1.1
245,968 + ABIE53_000238 0.11 -0.7
245,968 + ABIE53_000238 0.11 -2.3
245,968 + ABIE53_000238 0.11 -2.2
245,968 + ABIE53_000238 0.11 -1.0
245,968 + ABIE53_000238 0.11 -0.6
245,968 + ABIE53_000238 0.11 -1.7
245,969 - ABIE53_000238 0.11 -1.0
245,969 - ABIE53_000238 0.11 -3.0
245,969 - ABIE53_000238 0.11 -1.1
245,969 - ABIE53_000238 0.11 -1.3
245,969 - ABIE53_000238 0.11 +0.7
245,969 - ABIE53_000238 0.11 -1.4
245,969 - ABIE53_000238 0.11 -1.1
245,969 - ABIE53_000238 0.11 -2.0
245,969 - ABIE53_000238 0.11 -2.4
246,025 + ABIE53_000238 0.13 +3.3
246,025 + ABIE53_000238 0.13 -1.5
246,026 - ABIE53_000238 0.13 -0.4
246,026 - ABIE53_000238 0.13 -0.3
246,026 - ABIE53_000238 0.13 -2.0
246,026 - ABIE53_000238 0.13 -1.9
246,034 + ABIE53_000238 0.13 -2.4
246,034 + ABIE53_000238 0.13 +0.7
246,034 + ABIE53_000238 0.13 -1.3
246,034 + ABIE53_000238 0.13 -2.8
246,034 + ABIE53_000238 0.13 -1.3
246,034 + ABIE53_000238 0.13 -2.4
246,035 - ABIE53_000238 0.13 -1.1
246,035 - ABIE53_000238 0.13 +1.7
246,035 - ABIE53_000238 0.13 -0.7
246,035 - ABIE53_000238 0.13 -1.8
246,043 + ABIE53_000238 0.13 -0.9
246,043 + ABIE53_000238 0.13 -1.7
246,216 - ABIE53_000238 0.19 -0.6
246,217 + ABIE53_000238 0.19 -0.9
246,217 + ABIE53_000238 0.19 +2.1
246,217 + ABIE53_000238 0.19 -2.7
246,217 + ABIE53_000238 0.19 -0.9
246,217 + ABIE53_000238 0.19 -1.3
246,217 + ABIE53_000238 0.19 -0.6
246,217 + ABIE53_000238 0.19 -2.1
246,217 + ABIE53_000238 0.19 -2.2
246,217 + ABIE53_000238 0.19 -1.7
246,217 + ABIE53_000238 0.19 +1.1
246,217 + ABIE53_000238 0.19 +0.7
246,218 - ABIE53_000238 0.19 -0.6
246,218 - ABIE53_000238 0.19 -2.5
246,218 - ABIE53_000238 0.19 -2.3
246,218 - ABIE53_000238 0.19 -1.9
246,218 - ABIE53_000238 0.19 +0.1
246,218 - ABIE53_000238 0.19 -1.9
246,218 - ABIE53_000238 0.19 -3.1
246,218 - ABIE53_000238 0.19 -1.9
246,218 - ABIE53_000238 0.19 -1.5
246,218 - ABIE53_000238 0.19 -1.2
246,218 - ABIE53_000238 0.19 -1.0
246,218 - ABIE53_000238 0.19 -1.7
246,257 + ABIE53_000238 0.20 -0.6
246,379 + ABIE53_000238 0.25 +0.1
246,380 - ABIE53_000238 0.25 -0.9
246,550 + ABIE53_000238 0.30 -1.6
246,550 + ABIE53_000238 0.30 -0.3
246,551 - ABIE53_000238 0.30 -0.7
246,551 - ABIE53_000238 0.30 -1.3

Or see this region's nucleotide sequence