Strain Fitness in Sinorhizobium meliloti 1021 around SMc03173

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03172 and SMc03173 are separated by 10 nucleotidesSMc03173 and SMc03174 are separated by 169 nucleotidesSMc03174 and SMc03175 are separated by 199 nucleotides SMc03172: SMc03172 - glutamyl-tRNA synthetase, at 3,133,083 to 3,134,540 SMc03172 SMc03173: SMc03173 - lysyl-tRNA synthetase, at 3,134,551 to 3,136,047 SMc03173 SMc03174: SMc03174 - hypothetical protein, at 3,136,217 to 3,136,837 SMc03174 SMc03175: SMc03175 - nucleoside hydrolase, at 3,137,037 to 3,137,990 SMc03175 Position (kb) 3134 3135 3136 3137Strain fitness (log2 ratio) -1 0 1at 3136.390 kb on + strand, within SMc03174at 3136.390 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.719 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.898 kb on + strandat 3137.001 kb on + strandat 3137.036 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,136,390 + SMc03174 0.28 -0.1
3,136,390 + SMc03174 0.28 -0.7
3,136,392 + SMc03174 0.28 -0.5
3,136,392 + SMc03174 0.28 +0.5
3,136,392 + SMc03174 0.28 -0.8
3,136,392 + SMc03174 0.28 +0.5
3,136,393 - SMc03174 0.28 +0.3
3,136,393 - SMc03174 0.28 +0.3
3,136,393 - SMc03174 0.28 +1.2
3,136,719 - SMc03174 0.81 +0.0
3,136,738 - SMc03174 0.84 -0.1
3,136,738 - SMc03174 0.84 -0.1
3,136,738 - SMc03174 0.84 +1.5
3,136,738 - SMc03174 0.84 -1.1
3,136,898 + +0.5
3,137,001 + -0.0
3,137,036 + -0.1

Or see this region's nucleotide sequence