Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02247 and SMc02248 are separated by 141 nucleotides SMc02248 and SMc02249 are separated by 156 nucleotides SMc02249 and SMc02250 are separated by 219 nucleotides SMc02250 and SMc02251 are separated by 133 nucleotides
SMc02247: SMc02247 - signal peptide protein, at 610,089 to 610,526
SMc02247
SMc02248: SMc02248 - transcriptional regulator, at 610,668 to 611,315
SMc02248
SMc02249: SMc02249 - sensory transduction histidine kinase transmembrane protein, at 611,472 to 614,978
SMc02249
SMc02250: SMc02250 - large-conductance mechanosensitive channel, at 615,198 to 615,626
SMc02250
SMc02251: SMc02251 - aspartate aminotransferase, at 615,760 to 616,926
SMc02251
Position (kb) 611
612
613
614
615 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 610.596 kb on + strand at 610.596 kb on + strand at 610.597 kb on - strand at 610.597 kb on - strand at 611.187 kb on + strand, within SMc02248 at 611.285 kb on - strand at 611.474 kb on - strand at 611.474 kb on - strand at 611.627 kb on + strand at 612.201 kb on + strand, within SMc02249 at 612.201 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.292 kb on - strand, within SMc02249 at 612.294 kb on - strand, within SMc02249 at 612.733 kb on + strand, within SMc02249 at 612.733 kb on + strand, within SMc02249 at 612.734 kb on - strand, within SMc02249 at 612.734 kb on - strand, within SMc02249 at 612.734 kb on - strand, within SMc02249 at 613.255 kb on + strand, within SMc02249 at 613.255 kb on + strand, within SMc02249 at 613.256 kb on - strand, within SMc02249 at 613.256 kb on - strand, within SMc02249 at 613.259 kb on + strand, within SMc02249 at 613.259 kb on + strand, within SMc02249 at 613.259 kb on + strand, within SMc02249 at 613.260 kb on - strand, within SMc02249 at 613.260 kb on - strand, within SMc02249 at 613.294 kb on + strand, within SMc02249 at 613.295 kb on - strand, within SMc02249 at 613.442 kb on + strand, within SMc02249 at 613.445 kb on - strand, within SMc02249 at 613.603 kb on + strand, within SMc02249 at 613.604 kb on - strand, within SMc02249 at 613.604 kb on - strand, within SMc02249 at 613.604 kb on - strand, within SMc02249 at 613.766 kb on - strand, within SMc02249 at 613.768 kb on + strand, within SMc02249 at 613.768 kb on + strand, within SMc02249 at 613.774 kb on + strand, within SMc02249 at 613.826 kb on + strand, within SMc02249 at 613.827 kb on - strand, within SMc02249 at 613.827 kb on - strand, within SMc02249 at 613.882 kb on - strand, within SMc02249 at 614.026 kb on + strand, within SMc02249 at 614.027 kb on - strand, within SMc02249 at 614.027 kb on - strand, within SMc02249 at 614.254 kb on + strand, within SMc02249 at 614.302 kb on - strand, within SMc02249 at 614.336 kb on + strand, within SMc02249 at 614.339 kb on - strand, within SMc02249 at 614.339 kb on - strand, within SMc02249 at 614.358 kb on - strand, within SMc02249 at 614.429 kb on + strand, within SMc02249 at 614.514 kb on + strand, within SMc02249 at 614.521 kb on + strand, within SMc02249 at 614.583 kb on - strand, within SMc02249 at 614.584 kb on + strand, within SMc02249 at 614.585 kb on - strand, within SMc02249 at 614.758 kb on + strand at 614.759 kb on - strand at 614.759 kb on - strand at 614.759 kb on - strand at 614.812 kb on + strand at 614.812 kb on + strand at 614.812 kb on + strand at 614.813 kb on - strand at 614.830 kb on + strand at 614.831 kb on - strand at 614.831 kb on - strand at 615.002 kb on + strand at 615.002 kb on + strand at 615.024 kb on - strand at 615.046 kb on + strand at 615.047 kb on - strand at 615.098 kb on + strand at 615.098 kb on + strand at 615.279 kb on - strand, within SMc02250 at 615.363 kb on + strand, within SMc02250 at 615.363 kb on + strand, within SMc02250 at 615.364 kb on - strand, within SMc02250 at 615.439 kb on - strand, within SMc02250 at 615.439 kb on - strand, within SMc02250 at 615.832 kb on + strand at 615.833 kb on - strand at 615.833 kb on - strand at 615.833 kb on - strand at 615.946 kb on + strand, within SMc02251 at 615.946 kb on + strand, within SMc02251
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 610,596 + +0.4 610,596 + +0.5 610,597 - -0.5 610,597 - -2.2 611,187 + SMc02248 0.80 -2.2 611,285 - -1.9 611,474 - -0.3 611,474 - -0.4 611,627 + -3.4 612,201 + SMc02249 0.21 -1.7 612,201 + SMc02249 0.21 -1.7 612,291 + SMc02249 0.23 -1.6 612,291 + SMc02249 0.23 -2.7 612,291 + SMc02249 0.23 -2.3 612,291 + SMc02249 0.23 -2.0 612,291 + SMc02249 0.23 -1.6 612,291 + SMc02249 0.23 -1.0 612,292 - SMc02249 0.23 -1.6 612,294 - SMc02249 0.23 -2.1 612,733 + SMc02249 0.36 -0.7 612,733 + SMc02249 0.36 -1.4 612,734 - SMc02249 0.36 -2.2 612,734 - SMc02249 0.36 -3.3 612,734 - SMc02249 0.36 -2.6 613,255 + SMc02249 0.51 -2.3 613,255 + SMc02249 0.51 -2.0 613,256 - SMc02249 0.51 -3.0 613,256 - SMc02249 0.51 -1.8 613,259 + SMc02249 0.51 -1.8 613,259 + SMc02249 0.51 -2.6 613,259 + SMc02249 0.51 -2.2 613,260 - SMc02249 0.51 -2.3 613,260 - SMc02249 0.51 -3.9 613,294 + SMc02249 0.52 -2.5 613,295 - SMc02249 0.52 -1.6 613,442 + SMc02249 0.56 -2.9 613,445 - SMc02249 0.56 -1.8 613,603 + SMc02249 0.61 -1.9 613,604 - SMc02249 0.61 -2.3 613,604 - SMc02249 0.61 -2.7 613,604 - SMc02249 0.61 -2.7 613,766 - SMc02249 0.65 -3.0 613,768 + SMc02249 0.65 -1.4 613,768 + SMc02249 0.65 -2.6 613,774 + SMc02249 0.66 -1.9 613,826 + SMc02249 0.67 -1.5 613,827 - SMc02249 0.67 -2.5 613,827 - SMc02249 0.67 -0.9 613,882 - SMc02249 0.69 -2.0 614,026 + SMc02249 0.73 -2.6 614,027 - SMc02249 0.73 -1.9 614,027 - SMc02249 0.73 -0.6 614,254 + SMc02249 0.79 -2.2 614,302 - SMc02249 0.81 -2.4 614,336 + SMc02249 0.82 -2.8 614,339 - SMc02249 0.82 -0.6 614,339 - SMc02249 0.82 -2.9 614,358 - SMc02249 0.82 -0.6 614,429 + SMc02249 0.84 -2.5 614,514 + SMc02249 0.87 -0.8 614,521 + SMc02249 0.87 -0.3 614,583 - SMc02249 0.89 -3.6 614,584 + SMc02249 0.89 -2.4 614,585 - SMc02249 0.89 -1.6 614,758 + -0.4 614,759 - -1.0 614,759 - -1.2 614,759 - -1.2 614,812 + -1.2 614,812 + -1.4 614,812 + -4.1 614,813 - -0.4 614,830 + -2.1 614,831 - -0.0 614,831 - -0.5 615,002 + -1.0 615,002 + -2.2 615,024 - -3.0 615,046 + -1.5 615,047 - -2.3 615,098 + -0.0 615,098 + +0.1 615,279 - SMc02250 0.19 -0.4 615,363 + SMc02250 0.38 +1.0 615,363 + SMc02250 0.38 -0.5 615,364 - SMc02250 0.39 +0.0 615,439 - SMc02250 0.56 +0.3 615,439 - SMc02250 0.56 -0.2 615,832 + +0.0 615,833 - +0.3 615,833 - +0.3 615,833 - -0.2 615,946 + SMc02251 0.16 +0.3 615,946 + SMc02251 0.16 -0.2
Or see this region's nucleotide sequence