Strain Fitness in Sinorhizobium meliloti 1021 around SMc00611

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00609 and SMc00610 are separated by 207 nucleotidesSMc00610 and SMc00611 are separated by 103 nucleotidesSMc00611 and SMc00612 are separated by 49 nucleotidesSMc00612 and SMc00613 are separated by 32 nucleotides SMc00609: SMc00609 - anaerobic dimethyl sulfoxide reductase subunit A, at 1,279,209 to 1,281,323 SMc00609 SMc00610: SMc00610 - hypothetical protein, at 1,281,531 to 1,282,127 SMc00610 SMc00611: SMc00611 - hypothetical protein, at 1,282,231 to 1,284,774 SMc00611 SMc00612: SMc00612 - hypothetical protein, at 1,284,824 to 1,285,588 SMc00612 SMc00613: SMc00613 - hypothetical protein, at 1,285,621 to 1,286,205 SMc00613 Position (kb) 1282 1283 1284 1285Strain fitness (log2 ratio) -2 -1 0 1 2at 1281.273 kb on + strandat 1281.273 kb on + strandat 1281.368 kb on + strandat 1281.393 kb on - strandat 1281.518 kb on + strandat 1281.518 kb on + strandat 1281.519 kb on - strandat 1281.519 kb on - strandat 1281.519 kb on - strandat 1281.774 kb on + strand, within SMc00610at 1281.774 kb on + strand, within SMc00610at 1281.894 kb on + strand, within SMc00610at 1281.894 kb on + strand, within SMc00610at 1281.895 kb on - strand, within SMc00610at 1281.950 kb on + strand, within SMc00610at 1281.950 kb on + strand, within SMc00610at 1281.950 kb on + strand, within SMc00610at 1281.951 kb on - strand, within SMc00610at 1281.951 kb on - strand, within SMc00610at 1281.951 kb on - strand, within SMc00610at 1281.952 kb on + strand, within SMc00610at 1281.952 kb on + strand, within SMc00610at 1282.045 kb on + strand, within SMc00610at 1282.097 kb on + strandat 1282.098 kb on - strandat 1282.098 kb on - strandat 1282.126 kb on - strandat 1282.136 kb on + strandat 1282.136 kb on + strandat 1282.143 kb on + strandat 1282.143 kb on + strandat 1282.144 kb on - strandat 1282.144 kb on - strandat 1282.144 kb on - strandat 1282.146 kb on + strandat 1282.146 kb on + strandat 1282.151 kb on + strandat 1282.151 kb on + strandat 1282.152 kb on - strandat 1282.152 kb on - strandat 1282.156 kb on + strandat 1282.316 kb on - strandat 1282.489 kb on + strand, within SMc00611at 1282.489 kb on + strand, within SMc00611at 1282.490 kb on - strand, within SMc00611at 1282.490 kb on - strand, within SMc00611at 1282.510 kb on + strand, within SMc00611at 1282.510 kb on + strand, within SMc00611at 1282.510 kb on + strand, within SMc00611at 1282.510 kb on + strand, within SMc00611at 1282.511 kb on - strand, within SMc00611at 1282.627 kb on + strand, within SMc00611at 1282.954 kb on + strand, within SMc00611at 1282.954 kb on + strand, within SMc00611at 1282.954 kb on + strand, within SMc00611at 1282.955 kb on - strand, within SMc00611at 1283.005 kb on + strand, within SMc00611at 1283.005 kb on + strand, within SMc00611at 1283.006 kb on - strand, within SMc00611at 1283.006 kb on - strand, within SMc00611at 1283.134 kb on + strand, within SMc00611at 1283.146 kb on + strand, within SMc00611at 1283.146 kb on + strand, within SMc00611at 1283.147 kb on - strand, within SMc00611at 1283.359 kb on + strand, within SMc00611at 1283.705 kb on - strand, within SMc00611at 1283.971 kb on + strand, within SMc00611at 1283.971 kb on + strand, within SMc00611at 1283.971 kb on + strand, within SMc00611at 1283.972 kb on - strand, within SMc00611at 1283.972 kb on - strand, within SMc00611at 1283.972 kb on - strand, within SMc00611at 1283.972 kb on - strand, within SMc00611at 1284.095 kb on - strand, within SMc00611at 1284.124 kb on + strand, within SMc00611at 1284.447 kb on + strand, within SMc00611at 1284.553 kb on + strandat 1284.661 kb on + strandat 1284.661 kb on + strandat 1284.661 kb on + strandat 1284.743 kb on - strandat 1284.836 kb on - strandat 1285.088 kb on + strand, within SMc00612at 1285.190 kb on + strand, within SMc00612at 1285.202 kb on - strand, within SMc00612at 1285.370 kb on + strand, within SMc00612at 1285.371 kb on - strand, within SMc00612at 1285.511 kb on + strand, within SMc00612at 1285.511 kb on + strand, within SMc00612at 1285.511 kb on + strand, within SMc00612at 1285.511 kb on + strand, within SMc00612at 1285.512 kb on - strandat 1285.512 kb on - strandat 1285.512 kb on - strandat 1285.541 kb on + strandat 1285.542 kb on - strandat 1285.617 kb on + strandat 1285.633 kb on + strandat 1285.633 kb on + strandat 1285.633 kb on + strandat 1285.634 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
1,281,273 + +0.3
1,281,273 + -0.0
1,281,368 + -0.2
1,281,393 - +0.1
1,281,518 + -1.3
1,281,518 + +1.6
1,281,519 - +0.2
1,281,519 - -0.0
1,281,519 - +0.1
1,281,774 + SMc00610 0.41 +0.1
1,281,774 + SMc00610 0.41 -0.3
1,281,894 + SMc00610 0.61 +0.4
1,281,894 + SMc00610 0.61 -0.2
1,281,895 - SMc00610 0.61 +0.6
1,281,950 + SMc00610 0.70 -1.6
1,281,950 + SMc00610 0.70 -0.2
1,281,950 + SMc00610 0.70 -0.1
1,281,951 - SMc00610 0.70 +0.3
1,281,951 - SMc00610 0.70 +0.1
1,281,951 - SMc00610 0.70 +0.1
1,281,952 + SMc00610 0.71 +0.6
1,281,952 + SMc00610 0.71 +0.8
1,282,045 + SMc00610 0.86 +0.1
1,282,097 + -1.0
1,282,098 - +0.3
1,282,098 - +0.4
1,282,126 - +0.0
1,282,136 + -0.1
1,282,136 + -0.0
1,282,143 + -0.2
1,282,143 + +0.3
1,282,144 - +0.6
1,282,144 - -0.0
1,282,144 - +0.6
1,282,146 + +1.8
1,282,146 + +1.8
1,282,151 + +0.2
1,282,151 + -0.3
1,282,152 - +0.9
1,282,152 - +0.3
1,282,156 + +0.2
1,282,316 - +1.1
1,282,489 + SMc00611 0.10 -0.5
1,282,489 + SMc00611 0.10 +0.2
1,282,490 - SMc00611 0.10 +0.3
1,282,490 - SMc00611 0.10 +0.2
1,282,510 + SMc00611 0.11 +0.4
1,282,510 + SMc00611 0.11 +0.7
1,282,510 + SMc00611 0.11 +1.0
1,282,510 + SMc00611 0.11 -0.2
1,282,511 - SMc00611 0.11 +0.1
1,282,627 + SMc00611 0.16 -0.0
1,282,954 + SMc00611 0.28 +0.1
1,282,954 + SMc00611 0.28 -0.4
1,282,954 + SMc00611 0.28 -0.1
1,282,955 - SMc00611 0.28 -0.4
1,283,005 + SMc00611 0.30 -0.1
1,283,005 + SMc00611 0.30 -0.2
1,283,006 - SMc00611 0.30 -0.1
1,283,006 - SMc00611 0.30 +1.0
1,283,134 + SMc00611 0.35 -0.1
1,283,146 + SMc00611 0.36 -0.1
1,283,146 + SMc00611 0.36 -0.3
1,283,147 - SMc00611 0.36 -0.3
1,283,359 + SMc00611 0.44 -0.4
1,283,705 - SMc00611 0.58 -0.0
1,283,971 + SMc00611 0.68 -0.4
1,283,971 + SMc00611 0.68 -0.3
1,283,971 + SMc00611 0.68 -1.9
1,283,972 - SMc00611 0.68 -0.1
1,283,972 - SMc00611 0.68 -0.0
1,283,972 - SMc00611 0.68 -1.0
1,283,972 - SMc00611 0.68 +0.3
1,284,095 - SMc00611 0.73 -0.9
1,284,124 + SMc00611 0.74 -0.4
1,284,447 + SMc00611 0.87 +0.2
1,284,553 + -1.4
1,284,661 + -0.3
1,284,661 + -0.3
1,284,661 + +0.4
1,284,743 - +0.1
1,284,836 - -0.2
1,285,088 + SMc00612 0.35 +0.0
1,285,190 + SMc00612 0.48 +0.6
1,285,202 - SMc00612 0.49 -0.5
1,285,370 + SMc00612 0.71 +0.1
1,285,371 - SMc00612 0.72 +0.9
1,285,511 + SMc00612 0.90 +0.3
1,285,511 + SMc00612 0.90 +0.4
1,285,511 + SMc00612 0.90 -0.1
1,285,511 + SMc00612 0.90 -0.7
1,285,512 - +0.7
1,285,512 - -0.4
1,285,512 - +0.7
1,285,541 + -0.3
1,285,542 - -0.8
1,285,617 + +0.3
1,285,633 + -0.3
1,285,633 + -0.1
1,285,633 + -0.1
1,285,634 - -0.3

Or see this region's nucleotide sequence