Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00355 and SMc00356 overlap by 4 nucleotides SMc00356 and SMc00357 are separated by 161 nucleotides SMc00357 and SMc00358 are separated by 212 nucleotides
SMc00355: SMc00355 - hypothetical protein, at 309,988 to 311,040
SMc00355
SMc00356: SMc00356 - lysyl-tRNA synthetase, at 311,037 to 312,089
SMc00356
SMc00357: SMc00357 - elongation factor P, at 312,251 to 312,820
SMc00357
SMc00358: SMc00358 - cyclopropane-fatty-acyl-phospholipid synthase, at 313,033 to 314,274
SMc00358
Position (kb) 311
312
313 Strain fitness (log2 ratio) -2
-1
0
1 at 310.041 kb on - strand at 310.118 kb on + strand, within SMc00355 at 310.238 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.634 kb on + strand, within SMc00355 at 311.200 kb on + strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.459 kb on + strand, within SMc00356 at 311.459 kb on + strand, within SMc00356 at 311.635 kb on + strand, within SMc00356 at 311.635 kb on + strand, within SMc00356 at 311.786 kb on - strand, within SMc00356 at 311.866 kb on + strand, within SMc00356 at 312.140 kb on + strand at 312.140 kb on + strand at 312.140 kb on + strand at 312.229 kb on - strand at 312.237 kb on + strand at 312.893 kb on - strand at 312.991 kb on - strand at 312.991 kb on - strand at 312.991 kb on - strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.050 kb on + strand at 313.051 kb on - strand at 313.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 310,041 - +1.3 310,118 + SMc00355 0.12 -0.5 310,238 + SMc00355 0.24 -0.9 310,421 + SMc00355 0.41 +1.6 310,421 + SMc00355 0.41 +1.0 310,421 + SMc00355 0.41 -0.1 310,421 + SMc00355 0.41 -0.4 310,422 - SMc00355 0.41 -0.1 310,422 - SMc00355 0.41 -1.2 310,422 - SMc00355 0.41 -2.0 310,634 + SMc00355 0.61 +1.2 311,200 + SMc00356 0.15 -0.4 311,303 - SMc00356 0.25 -1.1 311,303 - SMc00356 0.25 -1.1 311,303 - SMc00356 0.25 -2.1 311,459 + SMc00356 0.40 -0.9 311,459 + SMc00356 0.40 -1.8 311,635 + SMc00356 0.57 -1.8 311,635 + SMc00356 0.57 -2.3 311,786 - SMc00356 0.71 -2.2 311,866 + SMc00356 0.79 -1.1 312,140 + +0.4 312,140 + -1.2 312,140 + -0.3 312,229 - -1.8 312,237 + +1.6 312,893 - -0.3 312,991 - +0.2 312,991 - +0.8 312,991 - +0.3 313,050 + +1.0 313,050 + +0.3 313,050 + +0.5 313,050 + +0.4 313,051 - +0.7 313,083 + -0.7
Or see this region's nucleotide sequence