Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1005 and SMa1007 are separated by 185 nucleotides SMa1007 and SMa1008 are separated by 282 nucleotides SMa1008 and SMa1009 are separated by 114 nucleotides
SMa1005: SMa1005 - hypothetical protein, at 556,840 to 557,640
SMa1005
SMa1007: SMa1007 - copper protein, at 557,826 to 558,254
SMa1007
SMa1008: SMa1008 - hypothetical protein, at 558,537 to 558,992
SMa1008
SMa1009: SMa1009 - Heavy metal binding protein, at 559,107 to 559,328
SMa1009
Position (kb) 557
558
559 Strain fitness (log2 ratio) -2
-1
0
1
2 at 556.839 kb on + strand at 556.839 kb on + strand at 556.839 kb on + strand at 556.839 kb on + strand at 556.839 kb on + strand at 556.840 kb on - strand at 556.840 kb on - strand at 556.840 kb on - strand at 556.915 kb on + strand at 556.942 kb on + strand, within SMa1005 at 556.943 kb on - strand, within SMa1005 at 557.020 kb on - strand, within SMa1005 at 557.020 kb on - strand, within SMa1005 at 557.119 kb on + strand, within SMa1005 at 557.170 kb on + strand, within SMa1005 at 557.382 kb on + strand, within SMa1005 at 557.501 kb on + strand, within SMa1005 at 557.501 kb on + strand, within SMa1005 at 557.502 kb on - strand, within SMa1005 at 557.502 kb on - strand, within SMa1005 at 557.502 kb on - strand, within SMa1005 at 557.502 kb on - strand, within SMa1005 at 557.729 kb on + strand at 557.760 kb on - strand at 557.760 kb on - strand at 557.822 kb on + strand at 557.822 kb on + strand at 557.822 kb on + strand at 557.823 kb on - strand at 557.823 kb on - strand at 557.823 kb on - strand at 557.825 kb on + strand at 557.825 kb on + strand at 557.825 kb on + strand at 557.825 kb on + strand at 557.826 kb on - strand at 557.846 kb on - strand at 558.004 kb on + strand, within SMa1007 at 558.004 kb on + strand, within SMa1007 at 558.005 kb on - strand, within SMa1007 at 558.097 kb on + strand, within SMa1007 at 558.097 kb on + strand, within SMa1007 at 558.173 kb on + strand, within SMa1007 at 558.364 kb on + strand at 558.364 kb on + strand at 558.395 kb on + strand at 558.396 kb on - strand at 558.396 kb on - strand at 558.399 kb on + strand at 558.400 kb on - strand at 558.467 kb on - strand at 558.495 kb on + strand at 558.495 kb on + strand at 558.495 kb on + strand at 558.495 kb on + strand at 558.495 kb on + strand at 558.496 kb on - strand at 558.496 kb on - strand at 558.562 kb on + strand at 558.605 kb on - strand, within SMa1008 at 558.605 kb on - strand, within SMa1008 at 558.605 kb on - strand, within SMa1008 at 558.736 kb on + strand, within SMa1008 at 558.737 kb on - strand, within SMa1008 at 558.737 kb on - strand, within SMa1008 at 558.828 kb on - strand, within SMa1008 at 558.898 kb on + strand, within SMa1008 at 559.104 kb on + strand at 559.110 kb on + strand at 559.121 kb on + strand at 559.122 kb on - strand at 559.122 kb on - strand at 559.150 kb on + strand, within SMa1009 at 559.151 kb on - strand, within SMa1009
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 556,839 + +0.5 556,839 + +0.3 556,839 + -0.3 556,839 + +0.3 556,839 + +0.3 556,840 - +0.3 556,840 - -1.4 556,840 - -0.3 556,915 + +0.3 556,942 + SMa1005 0.13 +0.6 556,943 - SMa1005 0.13 -0.4 557,020 - SMa1005 0.22 +0.2 557,020 - SMa1005 0.22 -0.2 557,119 + SMa1005 0.35 +0.3 557,170 + SMa1005 0.41 -0.6 557,382 + SMa1005 0.68 -0.7 557,501 + SMa1005 0.83 -0.2 557,501 + SMa1005 0.83 +0.1 557,502 - SMa1005 0.83 +0.2 557,502 - SMa1005 0.83 +0.2 557,502 - SMa1005 0.83 +0.0 557,502 - SMa1005 0.83 -0.1 557,729 + +0.4 557,760 - +1.2 557,760 - -0.3 557,822 + +0.2 557,822 + -0.3 557,822 + +0.3 557,823 - +0.4 557,823 - +0.2 557,823 - -0.0 557,825 + +0.1 557,825 + -0.0 557,825 + -0.1 557,825 + +1.2 557,826 - +0.7 557,846 - +0.2 558,004 + SMa1007 0.41 +0.5 558,004 + SMa1007 0.41 -0.8 558,005 - SMa1007 0.42 +1.8 558,097 + SMa1007 0.63 +1.5 558,097 + SMa1007 0.63 +0.3 558,173 + SMa1007 0.81 +0.2 558,364 + -0.8 558,364 + +0.2 558,395 + +0.4 558,396 - +0.1 558,396 - -1.9 558,399 + -0.1 558,400 - -0.0 558,467 - +2.1 558,495 + -0.4 558,495 + +0.4 558,495 + +0.6 558,495 + -0.1 558,495 + -0.9 558,496 - +0.4 558,496 - -0.0 558,562 + -0.2 558,605 - SMa1008 0.15 -0.1 558,605 - SMa1008 0.15 +0.1 558,605 - SMa1008 0.15 -0.5 558,736 + SMa1008 0.44 +0.4 558,737 - SMa1008 0.44 -0.4 558,737 - SMa1008 0.44 +0.2 558,828 - SMa1008 0.64 +0.3 558,898 + SMa1008 0.79 +1.4 559,104 + +0.1 559,110 + +0.5 559,121 + +0.4 559,122 - +0.5 559,122 - -0.2 559,150 + SMa1009 0.19 -0.1 559,151 - SMa1009 0.20 +0.1
Or see this region's nucleotide sequence