Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0190 and SMa0191 are separated by 609 nucleotides SMa0191 and SMa0193 overlap by 4 nucleotides SMa0193 and SMa0196 are separated by 296 nucleotides
SMa0190: SMa0190 - transcriptional regulator, at 104,560 to 105,189
SMa0190
SMa0191: SMa0191 - hypothetical protein, at 105,799 to 106,329
SMa0191
SMa0193: SMa0193 - hypothetical protein, at 106,326 to 106,652
SMa0193
SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863
SMa0196
Position (kb)
105
106
107 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 105.048 kb on + strand, within SMa0190 at 105.061 kb on + strand, within SMa0190 at 105.061 kb on + strand, within SMa0190 at 105.062 kb on - strand, within SMa0190 at 105.092 kb on - strand, within SMa0190 at 105.131 kb on + strand at 105.131 kb on + strand at 105.131 kb on + strand at 105.131 kb on + strand at 105.187 kb on + strand at 105.255 kb on - strand at 105.255 kb on - strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.264 kb on - strand at 105.305 kb on + strand at 105.365 kb on - strand at 105.394 kb on + strand at 105.394 kb on + strand at 105.394 kb on + strand at 105.450 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.480 kb on - strand at 105.480 kb on - strand at 105.483 kb on + strand at 105.549 kb on + strand at 105.550 kb on - strand at 105.666 kb on - strand at 105.666 kb on - strand at 105.675 kb on + strand at 105.728 kb on + strand at 105.728 kb on + strand at 105.729 kb on - strand at 105.729 kb on - strand at 105.729 kb on - strand at 105.737 kb on + strand at 105.737 kb on + strand at 105.777 kb on - strand at 105.875 kb on - strand, within SMa0191 at 105.976 kb on + strand, within SMa0191 at 105.977 kb on - strand, within SMa0191 at 106.080 kb on + strand, within SMa0191 at 106.109 kb on + strand, within SMa0191 at 106.110 kb on - strand, within SMa0191 at 106.110 kb on - strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.250 kb on + strand, within SMa0191 at 106.347 kb on + strand at 106.449 kb on - strand, within SMa0193 at 106.735 kb on + strand at 106.841 kb on + strand at 106.950 kb on + strand at 106.981 kb on - strand at 106.989 kb on + strand at 107.243 kb on + strand, within SMa0196
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 105,048 + SMa0190 0.77 +0.4 105,061 + SMa0190 0.80 -2.5 105,061 + SMa0190 0.80 +0.1 105,062 - SMa0190 0.80 -0.8 105,092 - SMa0190 0.84 -0.4 105,131 + -0.5 105,131 + -0.8 105,131 + +0.4 105,131 + +0.7 105,187 + +0.0 105,255 - +0.5 105,255 - -0.2 105,259 + +0.5 105,259 + -0.3 105,259 + +0.0 105,259 + -0.0 105,260 - +0.2 105,260 - +0.7 105,260 - -0.4 105,260 - -0.1 105,260 - +0.7 105,264 - -0.8 105,305 + -0.2 105,365 - -1.0 105,394 + +0.2 105,394 + +0.4 105,394 + -0.3 105,450 + -0.0 105,479 + -0.7 105,479 + -0.5 105,479 + -1.3 105,479 + +0.9 105,479 + -0.1 105,479 + -0.0 105,479 + +0.3 105,480 - +0.2 105,480 - +0.4 105,483 + +0.2 105,549 + -0.2 105,550 - +0.4 105,666 - +2.0 105,666 - +0.7 105,675 + -0.1 105,728 + -0.0 105,728 + +0.4 105,729 - -0.5 105,729 - +0.2 105,729 - -0.4 105,737 + +0.4 105,737 + +0.3 105,777 - +0.9 105,875 - SMa0191 0.14 +0.8 105,976 + SMa0191 0.33 -0.4 105,977 - SMa0191 0.34 +0.6 106,080 + SMa0191 0.53 +0.7 106,109 + SMa0191 0.58 +0.2 106,110 - SMa0191 0.59 -1.6 106,110 - SMa0191 0.59 +0.3 106,167 + SMa0191 0.69 +1.4 106,167 + SMa0191 0.69 +1.8 106,167 + SMa0191 0.69 +0.6 106,167 + SMa0191 0.69 +0.2 106,250 + SMa0191 0.85 -0.1 106,347 + +1.0 106,449 - SMa0193 0.38 +0.8 106,735 + -0.2 106,841 + -0.7 106,950 + -0.2 106,981 - +0.1 106,989 + -0.6 107,243 + SMa0196 0.32 -0.2
Or see this region's nucleotide sequence