Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20708

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20707 and SM_b20708 are separated by 1 nucleotidesSM_b20708 and SM_b20709 are separated by 210 nucleotides SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371 _b20707 SM_b20708: SM_b20708 - methylated-DNA--protein-cysteine methyltransferase, at 1,510,373 to 1,510,924 _b20708 SM_b20709: SM_b20709 - 3-methyladenine DNA glycosylase, at 1,511,135 to 1,511,692 _b20709 Position (kb) 1510 1511Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1509.569 kb on + strand, within SM_b20707at 1509.607 kb on + strand, within SM_b20707at 1509.607 kb on + strand, within SM_b20707at 1509.728 kb on + strand, within SM_b20707at 1509.728 kb on + strand, within SM_b20707at 1509.729 kb on - strand, within SM_b20707at 1509.801 kb on + strand, within SM_b20707at 1509.801 kb on + strand, within SM_b20707at 1509.801 kb on + strand, within SM_b20707at 1509.802 kb on - strand, within SM_b20707at 1509.885 kb on + strand, within SM_b20707at 1509.885 kb on + strand, within SM_b20707at 1509.908 kb on + strand, within SM_b20707at 1509.909 kb on - strand, within SM_b20707at 1509.909 kb on - strand, within SM_b20707at 1509.941 kb on + strand, within SM_b20707at 1509.942 kb on - strand, within SM_b20707at 1509.950 kb on + strand, within SM_b20707at 1510.067 kb on + strand, within SM_b20707at 1510.067 kb on + strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.068 kb on - strand, within SM_b20707at 1510.072 kb on - strand, within SM_b20707at 1510.072 kb on - strand, within SM_b20707at 1510.105 kb on + strand, within SM_b20707at 1510.106 kb on - strand, within SM_b20707at 1510.608 kb on + strand, within SM_b20708at 1510.651 kb on - strand, within SM_b20708at 1510.651 kb on - strand, within SM_b20708at 1510.654 kb on + strand, within SM_b20708at 1510.655 kb on - strand, within SM_b20708at 1510.655 kb on - strand, within SM_b20708at 1510.655 kb on - strand, within SM_b20708at 1510.914 kb on + strandat 1510.978 kb on + strandat 1510.978 kb on + strandat 1511.052 kb on - strandat 1511.173 kb on + strandat 1511.241 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.439 kb on + strand, within SM_b20709at 1511.481 kb on + strand, within SM_b20709at 1511.481 kb on + strand, within SM_b20709at 1511.482 kb on - strand, within SM_b20709at 1511.482 kb on - strand, within SM_b20709at 1511.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,509,569 + SM_b20707 0.36 -0.5
1,509,607 + SM_b20707 0.39 +0.1
1,509,607 + SM_b20707 0.39 +0.4
1,509,728 + SM_b20707 0.49 +0.4
1,509,728 + SM_b20707 0.49 +0.1
1,509,729 - SM_b20707 0.49 -0.5
1,509,801 + SM_b20707 0.55 +0.0
1,509,801 + SM_b20707 0.55 -0.1
1,509,801 + SM_b20707 0.55 -0.1
1,509,802 - SM_b20707 0.55 +1.8
1,509,885 + SM_b20707 0.61 -0.4
1,509,885 + SM_b20707 0.61 -0.1
1,509,908 + SM_b20707 0.63 -0.4
1,509,909 - SM_b20707 0.63 +0.2
1,509,909 - SM_b20707 0.63 +0.3
1,509,941 + SM_b20707 0.66 -0.1
1,509,942 - SM_b20707 0.66 +0.7
1,509,950 + SM_b20707 0.67 -0.1
1,510,067 + SM_b20707 0.76 -0.6
1,510,067 + SM_b20707 0.76 -0.4
1,510,068 - SM_b20707 0.76 -0.5
1,510,068 - SM_b20707 0.76 -0.1
1,510,068 - SM_b20707 0.76 +1.6
1,510,068 - SM_b20707 0.76 -2.9
1,510,068 - SM_b20707 0.76 -0.4
1,510,068 - SM_b20707 0.76 -0.3
1,510,068 - SM_b20707 0.76 -0.4
1,510,068 - SM_b20707 0.76 +0.0
1,510,068 - SM_b20707 0.76 +0.0
1,510,072 - SM_b20707 0.76 -0.9
1,510,072 - SM_b20707 0.76 +0.3
1,510,105 + SM_b20707 0.79 -0.0
1,510,106 - SM_b20707 0.79 +0.4
1,510,608 + SM_b20708 0.43 -0.2
1,510,651 - SM_b20708 0.50 -0.9
1,510,651 - SM_b20708 0.50 -0.6
1,510,654 + SM_b20708 0.51 -0.9
1,510,655 - SM_b20708 0.51 -0.9
1,510,655 - SM_b20708 0.51 +0.5
1,510,655 - SM_b20708 0.51 -1.4
1,510,914 + +0.2
1,510,978 + -0.6
1,510,978 + +2.4
1,511,052 - +1.4
1,511,173 + +0.0
1,511,241 + SM_b20709 0.19 -0.6
1,511,342 + SM_b20709 0.37 +0.8
1,511,342 + SM_b20709 0.37 +0.6
1,511,342 + SM_b20709 0.37 +0.1
1,511,343 - SM_b20709 0.37 +1.3
1,511,343 - SM_b20709 0.37 +0.0
1,511,343 - SM_b20709 0.37 +0.6
1,511,343 - SM_b20709 0.37 +0.1
1,511,343 - SM_b20709 0.37 -0.3
1,511,349 - SM_b20709 0.38 +0.1
1,511,349 - SM_b20709 0.38 +1.4
1,511,349 - SM_b20709 0.38 +0.0
1,511,349 - SM_b20709 0.38 -0.1
1,511,439 + SM_b20709 0.54 -0.1
1,511,481 + SM_b20709 0.62 +0.1
1,511,481 + SM_b20709 0.62 +0.2
1,511,482 - SM_b20709 0.62 -0.0
1,511,482 - SM_b20709 0.62 -0.2
1,511,896 + +1.4

Or see this region's nucleotide sequence