Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20659 and SM_b20660 are separated by 192 nucleotides SM_b20660 and SM_b20661 are separated by 134 nucleotides
SM_b20659: SM_b20659 - sugar uptake ABC transporter permease, at 1,459,807 to 1,460,739
_b20659
SM_b20660: SM_b20660 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,460,932 to 1,462,236
_b20660
SM_b20661: SM_b20661 - sugar uptake ABC transporter ATP-binding protein, at 1,462,371 to 1,463,438
_b20661
Position (kb)
1460
1461
1462
1463 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1460.004 kb on - strand, within SM_b20659 at 1460.004 kb on - strand, within SM_b20659 at 1460.004 kb on - strand, within SM_b20659 at 1460.090 kb on + strand, within SM_b20659 at 1460.475 kb on - strand, within SM_b20659 at 1460.480 kb on + strand, within SM_b20659 at 1460.481 kb on - strand, within SM_b20659 at 1460.495 kb on + strand, within SM_b20659 at 1460.496 kb on - strand, within SM_b20659 at 1460.728 kb on + strand at 1460.877 kb on + strand at 1460.900 kb on + strand at 1460.943 kb on - strand at 1460.946 kb on - strand at 1461.035 kb on + strand at 1461.036 kb on - strand at 1461.062 kb on + strand at 1461.116 kb on + strand, within SM_b20660 at 1461.245 kb on + strand, within SM_b20660 at 1461.246 kb on - strand, within SM_b20660 at 1461.402 kb on - strand, within SM_b20660 at 1461.402 kb on - strand, within SM_b20660 at 1461.404 kb on + strand, within SM_b20660 at 1461.405 kb on - strand, within SM_b20660 at 1461.405 kb on - strand, within SM_b20660 at 1461.434 kb on - strand, within SM_b20660 at 1461.506 kb on + strand, within SM_b20660 at 1461.506 kb on + strand, within SM_b20660 at 1461.507 kb on - strand, within SM_b20660 at 1461.507 kb on - strand, within SM_b20660 at 1461.521 kb on + strand, within SM_b20660 at 1461.617 kb on + strand at 1461.617 kb on + strand, within SM_b20660 at 1461.618 kb on - strand, within SM_b20660 at 1461.824 kb on + strand, within SM_b20660 at 1461.824 kb on + strand, within SM_b20660 at 1461.825 kb on - strand, within SM_b20660 at 1461.825 kb on - strand, within SM_b20660 at 1461.825 kb on - strand, within SM_b20660 at 1461.842 kb on + strand, within SM_b20660 at 1461.843 kb on - strand, within SM_b20660 at 1461.843 kb on - strand, within SM_b20660 at 1461.855 kb on - strand, within SM_b20660 at 1461.855 kb on - strand, within SM_b20660 at 1461.942 kb on + strand, within SM_b20660 at 1462.053 kb on + strand, within SM_b20660 at 1462.136 kb on + strand at 1462.136 kb on + strand at 1462.137 kb on - strand at 1462.239 kb on + strand at 1462.240 kb on - strand at 1462.240 kb on - strand at 1462.240 kb on - strand at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.607 kb on - strand, within SM_b20661 at 1462.737 kb on + strand, within SM_b20661 at 1462.874 kb on - strand, within SM_b20661 at 1463.171 kb on + strand, within SM_b20661 at 1463.179 kb on + strand, within SM_b20661
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,460,004 - SM_b20659 0.21 +0.0 1,460,004 - SM_b20659 0.21 +0.5 1,460,004 - SM_b20659 0.21 +0.1 1,460,090 + SM_b20659 0.30 +1.0 1,460,475 - SM_b20659 0.72 +1.3 1,460,480 + SM_b20659 0.72 +0.1 1,460,481 - SM_b20659 0.72 +0.2 1,460,495 + SM_b20659 0.74 +0.2 1,460,496 - SM_b20659 0.74 +0.2 1,460,728 + -0.8 1,460,877 + -1.4 1,460,900 + +0.2 1,460,943 - -0.1 1,460,946 - -2.0 1,461,035 + +0.2 1,461,036 - +0.1 1,461,062 + -0.2 1,461,116 + SM_b20660 0.14 -0.1 1,461,245 + SM_b20660 0.24 -0.4 1,461,246 - SM_b20660 0.24 -0.0 1,461,402 - SM_b20660 0.36 +1.0 1,461,402 - SM_b20660 0.36 -0.2 1,461,404 + SM_b20660 0.36 -0.0 1,461,405 - SM_b20660 0.36 +0.2 1,461,405 - SM_b20660 0.36 +0.0 1,461,434 - SM_b20660 0.38 -0.1 1,461,506 + SM_b20660 0.44 +0.6 1,461,506 + SM_b20660 0.44 +0.2 1,461,507 - SM_b20660 0.44 -0.3 1,461,507 - SM_b20660 0.44 -0.3 1,461,521 + SM_b20660 0.45 -0.6 1,461,617 + +2.8 1,461,617 + SM_b20660 0.52 -1.0 1,461,618 - SM_b20660 0.53 +0.1 1,461,824 + SM_b20660 0.68 -0.6 1,461,824 + SM_b20660 0.68 -0.4 1,461,825 - SM_b20660 0.68 -0.8 1,461,825 - SM_b20660 0.68 -0.7 1,461,825 - SM_b20660 0.68 +0.5 1,461,842 + SM_b20660 0.70 +0.0 1,461,843 - SM_b20660 0.70 -0.1 1,461,843 - SM_b20660 0.70 -0.8 1,461,855 - SM_b20660 0.71 +0.3 1,461,855 - SM_b20660 0.71 +0.2 1,461,942 + SM_b20660 0.77 +0.2 1,462,053 + SM_b20660 0.86 +0.7 1,462,136 + +0.3 1,462,136 + +0.6 1,462,137 - -1.3 1,462,239 + +0.0 1,462,240 - -0.3 1,462,240 - -0.0 1,462,240 - -0.6 1,462,588 + SM_b20661 0.20 -0.4 1,462,588 + SM_b20661 0.20 -0.2 1,462,588 + SM_b20661 0.20 +0.0 1,462,588 + SM_b20661 0.20 -0.1 1,462,607 - SM_b20661 0.22 -0.2 1,462,737 + SM_b20661 0.34 +0.7 1,462,874 - SM_b20661 0.47 -0.5 1,463,171 + SM_b20661 0.75 -0.6 1,463,179 + SM_b20661 0.76 +0.0
Or see this region's nucleotide sequence