Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20657 and SM_b20658 are separated by 7 nucleotides SM_b20658 and SM_b20659 are separated by 14 nucleotides SM_b20659 and SM_b20660 are separated by 192 nucleotides
SM_b20657: SM_b20657 - hypothetical protein, at 1,458,229 to 1,458,885
_b20657
SM_b20658: SM_b20658 - sugar uptake ABC transporter permease, at 1,458,893 to 1,459,792
_b20658
SM_b20659: SM_b20659 - sugar uptake ABC transporter permease, at 1,459,807 to 1,460,739
_b20659
SM_b20660: SM_b20660 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,460,932 to 1,462,236
_b20660
Position (kb)
1459
1460
1461 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1458.927 kb on + strand at 1458.927 kb on + strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.930 kb on + strand at 1458.931 kb on - strand at 1458.931 kb on - strand at 1458.948 kb on + strand at 1458.949 kb on - strand at 1458.949 kb on - strand at 1459.089 kb on + strand, within SM_b20658 at 1459.245 kb on + strand, within SM_b20658 at 1459.246 kb on - strand, within SM_b20658 at 1459.275 kb on - strand, within SM_b20658 at 1459.291 kb on - strand, within SM_b20658 at 1459.320 kb on + strand, within SM_b20658 at 1459.383 kb on + strand, within SM_b20658 at 1459.446 kb on + strand, within SM_b20658 at 1459.447 kb on - strand, within SM_b20658 at 1459.447 kb on - strand, within SM_b20658 at 1459.447 kb on - strand, within SM_b20658 at 1459.490 kb on + strand, within SM_b20658 at 1459.527 kb on + strand, within SM_b20658 at 1459.528 kb on - strand, within SM_b20658 at 1459.548 kb on + strand, within SM_b20658 at 1459.548 kb on + strand, within SM_b20658 at 1459.548 kb on + strand, within SM_b20658 at 1459.592 kb on - strand, within SM_b20658 at 1459.593 kb on + strand, within SM_b20658 at 1459.593 kb on + strand, within SM_b20658 at 1459.594 kb on - strand, within SM_b20658 at 1459.594 kb on - strand, within SM_b20658 at 1459.594 kb on - strand, within SM_b20658 at 1459.603 kb on - strand, within SM_b20658 at 1459.650 kb on + strand, within SM_b20658 at 1459.667 kb on + strand, within SM_b20658 at 1459.668 kb on - strand, within SM_b20658 at 1459.668 kb on - strand, within SM_b20658 at 1459.695 kb on + strand, within SM_b20658 at 1459.696 kb on - strand, within SM_b20658 at 1459.696 kb on - strand, within SM_b20658 at 1459.696 kb on - strand, within SM_b20658 at 1459.731 kb on + strand at 1459.732 kb on - strand at 1459.732 kb on - strand at 1460.004 kb on - strand, within SM_b20659 at 1460.004 kb on - strand, within SM_b20659 at 1460.004 kb on - strand, within SM_b20659 at 1460.090 kb on + strand, within SM_b20659 at 1460.475 kb on - strand, within SM_b20659 at 1460.480 kb on + strand, within SM_b20659 at 1460.481 kb on - strand, within SM_b20659 at 1460.495 kb on + strand, within SM_b20659 at 1460.496 kb on - strand, within SM_b20659 at 1460.728 kb on + strand at 1460.877 kb on + strand at 1460.900 kb on + strand at 1460.943 kb on - strand at 1460.946 kb on - strand at 1461.035 kb on + strand at 1461.036 kb on - strand at 1461.062 kb on + strand at 1461.116 kb on + strand, within SM_b20660 at 1461.245 kb on + strand, within SM_b20660 at 1461.246 kb on - strand, within SM_b20660 at 1461.402 kb on - strand, within SM_b20660 at 1461.402 kb on - strand, within SM_b20660 at 1461.404 kb on + strand, within SM_b20660 at 1461.405 kb on - strand, within SM_b20660 at 1461.405 kb on - strand, within SM_b20660 at 1461.434 kb on - strand, within SM_b20660 at 1461.506 kb on + strand, within SM_b20660 at 1461.506 kb on + strand, within SM_b20660 at 1461.507 kb on - strand, within SM_b20660 at 1461.507 kb on - strand, within SM_b20660 at 1461.521 kb on + strand, within SM_b20660 at 1461.617 kb on + strand at 1461.617 kb on + strand, within SM_b20660 at 1461.618 kb on - strand, within SM_b20660
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,458,927 + -0.3 1,458,927 + +0.9 1,458,928 - -0.7 1,458,928 - +0.1 1,458,928 - -0.1 1,458,928 - +0.0 1,458,930 + +0.1 1,458,931 - +0.0 1,458,931 - +0.9 1,458,948 + -0.5 1,458,949 - -0.1 1,458,949 - -0.9 1,459,089 + SM_b20658 0.22 +0.7 1,459,245 + SM_b20658 0.39 +1.3 1,459,246 - SM_b20658 0.39 -0.0 1,459,275 - SM_b20658 0.42 -0.3 1,459,291 - SM_b20658 0.44 +0.1 1,459,320 + SM_b20658 0.47 +0.0 1,459,383 + SM_b20658 0.54 -0.0 1,459,446 + SM_b20658 0.61 -0.4 1,459,447 - SM_b20658 0.62 +0.2 1,459,447 - SM_b20658 0.62 +0.7 1,459,447 - SM_b20658 0.62 +1.5 1,459,490 + SM_b20658 0.66 +0.2 1,459,527 + SM_b20658 0.70 -0.2 1,459,528 - SM_b20658 0.71 -0.5 1,459,548 + SM_b20658 0.73 -0.0 1,459,548 + SM_b20658 0.73 +0.1 1,459,548 + SM_b20658 0.73 -0.8 1,459,592 - SM_b20658 0.78 -0.3 1,459,593 + SM_b20658 0.78 +0.1 1,459,593 + SM_b20658 0.78 +0.0 1,459,594 - SM_b20658 0.78 +0.9 1,459,594 - SM_b20658 0.78 -0.6 1,459,594 - SM_b20658 0.78 +0.8 1,459,603 - SM_b20658 0.79 +0.9 1,459,650 + SM_b20658 0.84 -2.4 1,459,667 + SM_b20658 0.86 -0.8 1,459,668 - SM_b20658 0.86 -0.1 1,459,668 - SM_b20658 0.86 -0.1 1,459,695 + SM_b20658 0.89 +0.4 1,459,696 - SM_b20658 0.89 +1.2 1,459,696 - SM_b20658 0.89 -1.9 1,459,696 - SM_b20658 0.89 +0.3 1,459,731 + +0.1 1,459,732 - -0.4 1,459,732 - -0.2 1,460,004 - SM_b20659 0.21 +0.0 1,460,004 - SM_b20659 0.21 +0.5 1,460,004 - SM_b20659 0.21 +0.1 1,460,090 + SM_b20659 0.30 +1.0 1,460,475 - SM_b20659 0.72 +1.3 1,460,480 + SM_b20659 0.72 +0.1 1,460,481 - SM_b20659 0.72 +0.2 1,460,495 + SM_b20659 0.74 +0.2 1,460,496 - SM_b20659 0.74 +0.2 1,460,728 + -0.8 1,460,877 + -1.4 1,460,900 + +0.2 1,460,943 - -0.1 1,460,946 - -2.0 1,461,035 + +0.2 1,461,036 - +0.1 1,461,062 + -0.2 1,461,116 + SM_b20660 0.14 -0.1 1,461,245 + SM_b20660 0.24 -0.4 1,461,246 - SM_b20660 0.24 -0.0 1,461,402 - SM_b20660 0.36 +1.0 1,461,402 - SM_b20660 0.36 -0.2 1,461,404 + SM_b20660 0.36 -0.0 1,461,405 - SM_b20660 0.36 +0.2 1,461,405 - SM_b20660 0.36 +0.0 1,461,434 - SM_b20660 0.38 -0.1 1,461,506 + SM_b20660 0.44 +0.6 1,461,506 + SM_b20660 0.44 +0.2 1,461,507 - SM_b20660 0.44 -0.3 1,461,507 - SM_b20660 0.44 -0.3 1,461,521 + SM_b20660 0.45 -0.6 1,461,617 + +2.8 1,461,617 + SM_b20660 0.52 -1.0 1,461,618 - SM_b20660 0.53 +0.1
Or see this region's nucleotide sequence