Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20609

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20607 and SM_b20608 are separated by 32 nucleotidesSM_b20608 and SM_b20609 are separated by 306 nucleotidesSM_b20609 and SM_b20610 overlap by 14 nucleotides SM_b20607: SM_b20607 - hypothetical protein, at 1,621,026 to 1,621,490 _b20607 SM_b20608: SM_b20608 - ArsR family transcriptional regulator, at 1,621,523 to 1,621,861 _b20608 SM_b20609: SM_b20609 - two-component sensor histidine kinase, at 1,622,168 to 1,625,548 _b20609 SM_b20610: SM_b20610 - two-component response regulator protein, at 1,625,535 to 1,626,464 _b20610 Position (kb) 1622 1623 1624 1625 1626Strain fitness (log2 ratio) -1 0 1at 1621.262 kb on - strand, within SM_b20607at 1621.262 kb on - strand, within SM_b20607at 1621.279 kb on + strand, within SM_b20607at 1621.280 kb on - strand, within SM_b20607at 1621.280 kb on - strand, within SM_b20607at 1621.454 kb on + strandat 1621.454 kb on + strandat 1621.455 kb on - strandat 1621.455 kb on - strandat 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.567 kb on - strand, within SM_b20608at 1621.567 kb on - strand, within SM_b20608at 1621.608 kb on + strand, within SM_b20608at 1621.713 kb on - strand, within SM_b20608at 1622.115 kb on + strandat 1622.115 kb on + strandat 1622.207 kb on + strandat 1622.208 kb on - strandat 1622.208 kb on - strandat 1622.209 kb on + strandat 1622.210 kb on - strandat 1622.243 kb on + strandat 1622.244 kb on - strandat 1622.356 kb on + strandat 1622.356 kb on + strandat 1622.356 kb on + strandat 1622.357 kb on - strandat 1622.367 kb on - strandat 1622.444 kb on + strandat 1622.532 kb on - strand, within SM_b20609at 1622.532 kb on - strand, within SM_b20609at 1622.608 kb on - strand, within SM_b20609at 1622.608 kb on - strand, within SM_b20609at 1622.787 kb on - strand, within SM_b20609at 1623.089 kb on + strand, within SM_b20609at 1623.089 kb on + strand, within SM_b20609at 1623.090 kb on - strand, within SM_b20609at 1623.090 kb on - strand, within SM_b20609at 1623.090 kb on - strand, within SM_b20609at 1623.090 kb on - strand, within SM_b20609at 1623.092 kb on + strand, within SM_b20609at 1623.108 kb on - strand, within SM_b20609at 1623.108 kb on - strand, within SM_b20609at 1623.108 kb on - strand, within SM_b20609at 1623.314 kb on + strand, within SM_b20609at 1623.314 kb on + strand, within SM_b20609at 1623.314 kb on + strand, within SM_b20609at 1623.314 kb on + strand, within SM_b20609at 1623.315 kb on - strand, within SM_b20609at 1623.315 kb on - strand, within SM_b20609at 1623.315 kb on - strand, within SM_b20609at 1623.452 kb on + strand, within SM_b20609at 1623.452 kb on + strand, within SM_b20609at 1623.453 kb on - strand, within SM_b20609at 1623.557 kb on + strand, within SM_b20609at 1623.558 kb on - strand, within SM_b20609at 1623.559 kb on + strand, within SM_b20609at 1623.560 kb on - strand, within SM_b20609at 1623.560 kb on - strand, within SM_b20609at 1623.728 kb on + strand, within SM_b20609at 1624.049 kb on + strand, within SM_b20609at 1624.205 kb on + strand, within SM_b20609at 1624.406 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.606 kb on + strand, within SM_b20609at 1624.730 kb on + strand, within SM_b20609at 1624.900 kb on + strand, within SM_b20609at 1624.901 kb on - strand, within SM_b20609at 1624.910 kb on + strand, within SM_b20609at 1625.050 kb on + strand, within SM_b20609at 1625.050 kb on + strand, within SM_b20609at 1625.050 kb on + strand, within SM_b20609at 1625.051 kb on - strand, within SM_b20609at 1625.283 kb on - strandat 1625.468 kb on + strandat 1625.468 kb on + strandat 1625.468 kb on + strandat 1625.572 kb on + strandat 1625.572 kb on + strandat 1625.573 kb on - strandat 1625.573 kb on - strandat 1625.573 kb on - strandat 1625.644 kb on + strand, within SM_b20610at 1625.882 kb on + strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,621,262 - SM_b20607 0.51 -1.0
1,621,262 - SM_b20607 0.51 +0.3
1,621,279 + SM_b20607 0.54 +0.7
1,621,280 - SM_b20607 0.55 -0.2
1,621,280 - SM_b20607 0.55 -0.5
1,621,454 + -0.3
1,621,454 + -0.3
1,621,455 - +0.1
1,621,455 - -0.2
1,621,566 + SM_b20608 0.13 -0.3
1,621,566 + SM_b20608 0.13 +0.1
1,621,566 + SM_b20608 0.13 -0.1
1,621,566 + SM_b20608 0.13 +0.2
1,621,567 - SM_b20608 0.13 +0.2
1,621,567 - SM_b20608 0.13 +0.0
1,621,608 + SM_b20608 0.25 -0.4
1,621,713 - SM_b20608 0.56 -0.1
1,622,115 + +0.6
1,622,115 + -0.5
1,622,207 + -0.3
1,622,208 - +1.0
1,622,208 - +0.4
1,622,209 + +0.2
1,622,210 - -1.0
1,622,243 + +0.7
1,622,244 - -0.2
1,622,356 + -0.9
1,622,356 + -0.4
1,622,356 + -0.0
1,622,357 - +0.1
1,622,367 - -0.1
1,622,444 + +0.6
1,622,532 - SM_b20609 0.11 -0.5
1,622,532 - SM_b20609 0.11 -0.5
1,622,608 - SM_b20609 0.13 +0.2
1,622,608 - SM_b20609 0.13 -0.6
1,622,787 - SM_b20609 0.18 +0.5
1,623,089 + SM_b20609 0.27 -0.0
1,623,089 + SM_b20609 0.27 +0.9
1,623,090 - SM_b20609 0.27 +0.7
1,623,090 - SM_b20609 0.27 -0.4
1,623,090 - SM_b20609 0.27 -1.2
1,623,090 - SM_b20609 0.27 -0.9
1,623,092 + SM_b20609 0.27 +0.6
1,623,108 - SM_b20609 0.28 -0.3
1,623,108 - SM_b20609 0.28 -0.7
1,623,108 - SM_b20609 0.28 -1.2
1,623,314 + SM_b20609 0.34 -0.1
1,623,314 + SM_b20609 0.34 -0.1
1,623,314 + SM_b20609 0.34 -0.9
1,623,314 + SM_b20609 0.34 -1.1
1,623,315 - SM_b20609 0.34 +0.1
1,623,315 - SM_b20609 0.34 +0.3
1,623,315 - SM_b20609 0.34 -0.4
1,623,452 + SM_b20609 0.38 -0.1
1,623,452 + SM_b20609 0.38 -0.4
1,623,453 - SM_b20609 0.38 -0.7
1,623,557 + SM_b20609 0.41 -0.1
1,623,558 - SM_b20609 0.41 +0.0
1,623,559 + SM_b20609 0.41 -0.5
1,623,560 - SM_b20609 0.41 -0.0
1,623,560 - SM_b20609 0.41 +0.1
1,623,728 + SM_b20609 0.46 -0.1
1,624,049 + SM_b20609 0.56 -0.1
1,624,205 + SM_b20609 0.60 +1.1
1,624,406 + SM_b20609 0.66 +0.4
1,624,606 + SM_b20609 0.72 -1.4
1,624,606 + SM_b20609 0.72 +0.2
1,624,606 + SM_b20609 0.72 -0.4
1,624,606 + SM_b20609 0.72 -0.2
1,624,606 + SM_b20609 0.72 -0.1
1,624,730 + SM_b20609 0.76 -0.6
1,624,900 + SM_b20609 0.81 -0.9
1,624,901 - SM_b20609 0.81 -0.8
1,624,910 + SM_b20609 0.81 -0.5
1,625,050 + SM_b20609 0.85 +0.3
1,625,050 + SM_b20609 0.85 +0.1
1,625,050 + SM_b20609 0.85 -0.1
1,625,051 - SM_b20609 0.85 +1.0
1,625,283 - +0.2
1,625,468 + +0.2
1,625,468 + +0.8
1,625,468 + -0.6
1,625,572 + +0.0
1,625,572 + +0.5
1,625,573 - +0.1
1,625,573 - +0.5
1,625,573 - +0.1
1,625,644 + SM_b20610 0.12 +0.1
1,625,882 + SM_b20610 0.37 -0.1
1,626,184 - SM_b20610 0.70 +0.1
1,626,184 - SM_b20610 0.70 -0.3
1,626,184 - SM_b20610 0.70 -0.9
1,626,210 + SM_b20610 0.73 -0.3
1,626,210 + SM_b20610 0.73 +0.1
1,626,210 + SM_b20610 0.73 -0.1
1,626,393 + -0.2
1,626,393 + -0.5
1,626,393 + -0.2
1,626,393 + +0.1
1,626,393 + -0.4
1,626,393 + -0.5
1,626,393 + -0.1
1,626,393 + -1.1
1,626,393 + -0.2
1,626,393 + -0.3
1,626,393 + +0.2
1,626,393 + +0.4
1,626,394 - -0.1
1,626,394 - -0.4
1,626,394 - -0.3
1,626,394 - -0.2
1,626,394 - -0.0

Or see this region's nucleotide sequence