Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_700 and Pf1N1B4_701 are separated by 172 nucleotides Pf1N1B4_701 and Pf1N1B4_702 are separated by 9 nucleotides Pf1N1B4_702 and Pf1N1B4_703 are separated by 179 nucleotides
Pf1N1B4_700 - LysR-family transcriptional regulator clustered with PA0057, at 799,556 to 800,443
_700
Pf1N1B4_701 - FIG00954094: hypothetical protein, at 800,616 to 800,837
_701
Pf1N1B4_702 - Transcriptional regulator PobR, AraC family, at 800,847 to 801,758
_702
Pf1N1B4_703 - P-hydroxybenzoate hydroxylase (EC 1.14.13.2), at 801,938 to 803,131
_703
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 800.048 kb on + strand, within Pf1N1B4_700 at 800.048 kb on + strand, within Pf1N1B4_700 at 800.049 kb on - strand, within Pf1N1B4_700 at 800.049 kb on - strand, within Pf1N1B4_700 at 800.117 kb on + strand, within Pf1N1B4_700 at 800.117 kb on + strand, within Pf1N1B4_700 at 800.118 kb on - strand, within Pf1N1B4_700 at 800.118 kb on - strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.346 kb on - strand, within Pf1N1B4_700 at 800.346 kb on - strand, within Pf1N1B4_700 at 800.346 kb on - strand, within Pf1N1B4_700 at 800.346 kb on - strand, within Pf1N1B4_700 at 800.404 kb on + strand at 800.405 kb on - strand at 800.405 kb on - strand at 800.405 kb on - strand at 800.405 kb on - strand at 800.441 kb on + strand at 800.441 kb on + strand at 800.441 kb on + strand at 800.441 kb on + strand at 800.441 kb on + strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.565 kb on - strand at 800.615 kb on + strand at 800.615 kb on + strand at 800.615 kb on + strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.640 kb on - strand, within Pf1N1B4_701 at 800.640 kb on - strand, within Pf1N1B4_701 at 800.682 kb on + strand, within Pf1N1B4_701 at 800.682 kb on + strand, within Pf1N1B4_701 at 800.682 kb on + strand, within Pf1N1B4_701 at 800.683 kb on - strand at 800.723 kb on - strand, within Pf1N1B4_701 at 800.723 kb on - strand, within Pf1N1B4_701 at 800.724 kb on + strand, within Pf1N1B4_701 at 800.724 kb on + strand, within Pf1N1B4_701 at 800.725 kb on - strand at 800.725 kb on - strand, within Pf1N1B4_701 at 800.989 kb on + strand, within Pf1N1B4_702 at 800.989 kb on + strand, within Pf1N1B4_702 at 800.990 kb on - strand, within Pf1N1B4_702 at 801.007 kb on + strand, within Pf1N1B4_702 at 801.008 kb on - strand, within Pf1N1B4_702 at 801.263 kb on + strand at 801.356 kb on - strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.598 kb on - strand, within Pf1N1B4_702 at 801.598 kb on - strand, within Pf1N1B4_702 at 801.681 kb on + strand at 801.681 kb on + strand at 801.681 kb on + strand at 801.715 kb on + strand at 801.715 kb on + strand at 801.715 kb on + strand at 801.715 kb on + strand at 801.716 kb on - strand at 801.816 kb on + strand at 801.816 kb on + strand at 801.816 kb on + strand at 801.817 kb on - strand at 801.817 kb on - strand at 801.930 kb on + strand at 801.993 kb on + strand at 802.058 kb on + strand, within Pf1N1B4_703 at 802.058 kb on + strand, within Pf1N1B4_703 at 802.058 kb on + strand, within Pf1N1B4_703 at 802.058 kb on + strand, within Pf1N1B4_703 at 802.058 kb on + strand, within Pf1N1B4_703 at 802.059 kb on - strand, within Pf1N1B4_703 at 802.059 kb on - strand, within Pf1N1B4_703 at 802.059 kb on - strand, within Pf1N1B4_703 at 802.059 kb on - strand, within Pf1N1B4_703 at 802.104 kb on + strand, within Pf1N1B4_703 at 802.104 kb on + strand, within Pf1N1B4_703 at 802.105 kb on - strand, within Pf1N1B4_703 at 802.105 kb on - strand, within Pf1N1B4_703 at 802.244 kb on + strand, within Pf1N1B4_703 at 802.245 kb on - strand, within Pf1N1B4_703 at 802.245 kb on - strand, within Pf1N1B4_703 at 802.310 kb on + strand, within Pf1N1B4_703 at 802.310 kb on + strand, within Pf1N1B4_703 at 802.310 kb on + strand, within Pf1N1B4_703 at 802.310 kb on + strand, within Pf1N1B4_703 at 802.310 kb on + strand, within Pf1N1B4_703 at 802.310 kb on + strand, within Pf1N1B4_703 at 802.310 kb on + strand, within Pf1N1B4_703 at 802.310 kb on + strand, within Pf1N1B4_703 at 802.311 kb on - strand, within Pf1N1B4_703 at 802.311 kb on - strand, within Pf1N1B4_703 at 802.311 kb on - strand, within Pf1N1B4_703 at 802.311 kb on - strand, within Pf1N1B4_703 at 802.388 kb on + strand, within Pf1N1B4_703 at 802.388 kb on + strand, within Pf1N1B4_703 at 802.406 kb on + strand, within Pf1N1B4_703 at 802.406 kb on + strand, within Pf1N1B4_703 at 802.407 kb on - strand, within Pf1N1B4_703 at 802.407 kb on - strand, within Pf1N1B4_703 at 802.601 kb on - strand, within Pf1N1B4_703 at 802.610 kb on + strand, within Pf1N1B4_703 at 802.611 kb on - strand, within Pf1N1B4_703 at 802.611 kb on - strand, within Pf1N1B4_703 at 802.611 kb on - strand, within Pf1N1B4_703
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 800,048 + Pf1N1B4_700 0.55 -1.3 800,048 + Pf1N1B4_700 0.55 -0.4 800,049 - Pf1N1B4_700 0.56 -0.8 800,049 - Pf1N1B4_700 0.56 +0.3 800,117 + Pf1N1B4_700 0.63 +1.0 800,117 + Pf1N1B4_700 0.63 +0.2 800,118 - Pf1N1B4_700 0.63 -0.4 800,118 - Pf1N1B4_700 0.63 -0.4 800,336 + Pf1N1B4_700 0.88 +1.6 800,336 + Pf1N1B4_700 0.88 +1.4 800,336 + Pf1N1B4_700 0.88 +1.6 800,336 + Pf1N1B4_700 0.88 -0.8 800,336 + Pf1N1B4_700 0.88 +0.9 800,336 + Pf1N1B4_700 0.88 -0.9 800,336 + Pf1N1B4_700 0.88 +0.4 800,336 + Pf1N1B4_700 0.88 +0.9 800,337 - Pf1N1B4_700 0.88 -0.8 800,337 - Pf1N1B4_700 0.88 +0.2 800,337 - Pf1N1B4_700 0.88 +0.8 800,337 - Pf1N1B4_700 0.88 +1.2 800,337 - Pf1N1B4_700 0.88 +0.2 800,337 - Pf1N1B4_700 0.88 +0.3 800,346 - Pf1N1B4_700 0.89 +2.3 800,346 - Pf1N1B4_700 0.89 -2.1 800,346 - Pf1N1B4_700 0.89 +0.6 800,346 - Pf1N1B4_700 0.89 +0.4 800,404 + -0.0 800,405 - -0.8 800,405 - +0.1 800,405 - -0.4 800,405 - +2.3 800,441 + +0.6 800,441 + +1.2 800,441 + -0.2 800,441 + +0.9 800,441 + +1.2 800,442 - +1.2 800,442 - +0.6 800,442 - +3.2 800,442 - +0.7 800,442 - +1.8 800,442 - -0.4 800,442 - +1.2 800,442 - -0.4 800,442 - +0.8 800,565 - -1.1 800,615 + -1.4 800,615 + -0.4 800,615 + -1.1 800,616 - -1.3 800,616 - +0.2 800,616 - -1.6 800,616 - +0.0 800,616 - +0.7 800,616 - -0.8 800,616 - -0.8 800,640 - Pf1N1B4_701 0.11 +0.2 800,640 - Pf1N1B4_701 0.11 -0.4 800,682 + Pf1N1B4_701 0.30 -0.0 800,682 + Pf1N1B4_701 0.30 +0.2 800,682 + Pf1N1B4_701 0.30 -0.4 800,683 - +1.2 800,723 - Pf1N1B4_701 0.48 -1.4 800,723 - Pf1N1B4_701 0.48 +0.9 800,724 + Pf1N1B4_701 0.49 -0.1 800,724 + Pf1N1B4_701 0.49 -1.2 800,725 - +0.2 800,725 - Pf1N1B4_701 0.49 -1.1 800,989 + Pf1N1B4_702 0.16 -0.7 800,989 + Pf1N1B4_702 0.16 -1.1 800,990 - Pf1N1B4_702 0.16 -0.1 801,007 + Pf1N1B4_702 0.18 -0.9 801,008 - Pf1N1B4_702 0.18 -1.8 801,263 + +1.2 801,356 - Pf1N1B4_702 0.56 +0.2 801,597 + Pf1N1B4_702 0.82 -0.6 801,597 + Pf1N1B4_702 0.82 -0.4 801,597 + Pf1N1B4_702 0.82 -0.2 801,597 + Pf1N1B4_702 0.82 -0.8 801,597 + Pf1N1B4_702 0.82 -2.2 801,597 + Pf1N1B4_702 0.82 +0.5 801,598 - Pf1N1B4_702 0.82 +0.2 801,598 - Pf1N1B4_702 0.82 -0.6 801,681 + -0.3 801,681 + -0.7 801,681 + -1.1 801,715 + -0.4 801,715 + -0.6 801,715 + -1.1 801,715 + -1.1 801,716 - +1.6 801,816 + -1.6 801,816 + +0.9 801,816 + -1.8 801,817 - -0.4 801,817 - +0.4 801,930 + +0.0 801,993 + -1.6 802,058 + Pf1N1B4_703 0.10 +1.2 802,058 + Pf1N1B4_703 0.10 +0.9 802,058 + Pf1N1B4_703 0.10 +0.1 802,058 + Pf1N1B4_703 0.10 +0.9 802,058 + Pf1N1B4_703 0.10 +0.2 802,059 - Pf1N1B4_703 0.10 -1.5 802,059 - Pf1N1B4_703 0.10 +0.6 802,059 - Pf1N1B4_703 0.10 +2.5 802,059 - Pf1N1B4_703 0.10 +0.4 802,104 + Pf1N1B4_703 0.14 -1.2 802,104 + Pf1N1B4_703 0.14 -2.3 802,105 - Pf1N1B4_703 0.14 -0.1 802,105 - Pf1N1B4_703 0.14 +0.2 802,244 + Pf1N1B4_703 0.26 +0.9 802,245 - Pf1N1B4_703 0.26 -0.4 802,245 - Pf1N1B4_703 0.26 +0.6 802,310 + Pf1N1B4_703 0.31 +2.5 802,310 + Pf1N1B4_703 0.31 +0.2 802,310 + Pf1N1B4_703 0.31 -0.6 802,310 + Pf1N1B4_703 0.31 -1.3 802,310 + Pf1N1B4_703 0.31 +0.6 802,310 + Pf1N1B4_703 0.31 +0.2 802,310 + Pf1N1B4_703 0.31 +0.2 802,310 + Pf1N1B4_703 0.31 +0.9 802,311 - Pf1N1B4_703 0.31 -0.2 802,311 - Pf1N1B4_703 0.31 +1.0 802,311 - Pf1N1B4_703 0.31 -0.8 802,311 - Pf1N1B4_703 0.31 +1.4 802,388 + Pf1N1B4_703 0.38 +0.0 802,388 + Pf1N1B4_703 0.38 +0.0 802,406 + Pf1N1B4_703 0.39 +1.2 802,406 + Pf1N1B4_703 0.39 -0.4 802,407 - Pf1N1B4_703 0.39 -0.1 802,407 - Pf1N1B4_703 0.39 +0.4 802,601 - Pf1N1B4_703 0.56 +1.2 802,610 + Pf1N1B4_703 0.56 -2.0 802,611 - Pf1N1B4_703 0.56 -2.0 802,611 - Pf1N1B4_703 0.56 -0.1 802,611 - Pf1N1B4_703 0.56 -0.2
Or see this region's nucleotide sequence