Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_439 and Pf1N1B4_440 are separated by 676 nucleotides
Pf1N1B4_439 - hypothetical protein, at 521,273 to 521,464
_439
Pf1N1B4_440 - hypothetical protein, at 522,141 to 522,383
_440
Position (kb) 522
523 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 521.145 kb on + strand at 521.145 kb on + strand at 521.145 kb on + strand at 521.148 kb on + strand at 521.148 kb on + strand at 521.149 kb on - strand at 521.149 kb on - strand at 521.181 kb on + strand at 521.182 kb on - strand at 521.202 kb on + strand at 521.202 kb on + strand at 521.203 kb on - strand at 521.203 kb on - strand at 521.203 kb on - strand at 521.273 kb on - strand at 521.357 kb on + strand, within Pf1N1B4_439 at 521.357 kb on + strand, within Pf1N1B4_439 at 521.357 kb on + strand, within Pf1N1B4_439 at 521.357 kb on + strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.363 kb on + strand, within Pf1N1B4_439 at 521.363 kb on + strand, within Pf1N1B4_439 at 521.363 kb on + strand, within Pf1N1B4_439 at 521.364 kb on - strand, within Pf1N1B4_439 at 521.364 kb on - strand, within Pf1N1B4_439 at 521.403 kb on - strand, within Pf1N1B4_439 at 521.403 kb on - strand, within Pf1N1B4_439 at 521.406 kb on - strand, within Pf1N1B4_439 at 521.444 kb on + strand, within Pf1N1B4_439 at 521.444 kb on + strand, within Pf1N1B4_439 at 521.444 kb on + strand, within Pf1N1B4_439 at 521.444 kb on + strand, within Pf1N1B4_439 at 521.445 kb on - strand at 521.463 kb on - strand at 521.463 kb on - strand at 521.533 kb on + strand at 521.534 kb on - strand at 521.534 kb on - strand at 521.571 kb on + strand at 521.604 kb on + strand at 521.604 kb on + strand at 521.604 kb on + strand at 521.604 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.609 kb on - strand at 521.610 kb on + strand at 521.610 kb on + strand at 521.610 kb on + strand at 521.610 kb on + strand at 521.610 kb on + strand at 521.611 kb on - strand at 521.668 kb on + strand at 521.668 kb on + strand at 521.694 kb on + strand at 521.694 kb on + strand at 521.694 kb on + strand at 521.694 kb on + strand at 521.695 kb on - strand at 521.728 kb on + strand at 521.728 kb on + strand at 521.729 kb on - strand at 521.735 kb on + strand at 521.736 kb on - strand at 521.750 kb on + strand at 521.774 kb on + strand at 521.775 kb on - strand at 521.802 kb on + strand at 521.803 kb on - strand at 521.828 kb on - strand at 521.829 kb on + strand at 521.829 kb on + strand at 521.830 kb on - strand at 521.830 kb on - strand at 521.830 kb on - strand at 521.830 kb on - strand at 521.833 kb on + strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.882 kb on + strand at 521.883 kb on - strand at 521.929 kb on + strand at 521.990 kb on - strand at 522.021 kb on - strand at 522.021 kb on - strand at 522.080 kb on + strand at 522.081 kb on - strand at 522.081 kb on - strand at 522.116 kb on + strand at 522.116 kb on + strand at 522.116 kb on + strand at 522.117 kb on - strand at 522.182 kb on + strand, within Pf1N1B4_440 at 522.204 kb on + strand, within Pf1N1B4_440 at 522.226 kb on - strand, within Pf1N1B4_440 at 522.226 kb on - strand, within Pf1N1B4_440 at 522.282 kb on + strand at 522.351 kb on + strand, within Pf1N1B4_440 at 522.351 kb on + strand, within Pf1N1B4_440 at 522.351 kb on + strand, within Pf1N1B4_440 at 522.351 kb on + strand, within Pf1N1B4_440 at 522.352 kb on - strand, within Pf1N1B4_440 at 522.352 kb on - strand, within Pf1N1B4_440 at 522.352 kb on - strand, within Pf1N1B4_440 at 522.396 kb on + strand at 522.476 kb on - strand at 522.516 kb on + strand at 522.517 kb on - strand at 522.517 kb on - strand at 522.517 kb on - strand at 522.517 kb on - strand at 522.660 kb on + strand at 522.770 kb on - strand at 522.770 kb on - strand at 522.791 kb on + strand at 522.791 kb on + strand at 522.791 kb on + strand at 522.792 kb on - strand at 522.792 kb on - strand at 522.792 kb on - strand at 522.792 kb on - strand at 522.831 kb on - strand at 523.009 kb on + strand at 523.055 kb on + strand at 523.055 kb on + strand at 523.055 kb on + strand at 523.055 kb on + strand at 523.055 kb on + strand at 523.056 kb on - strand at 523.056 kb on - strand at 523.056 kb on - strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.060 kb on - strand at 523.060 kb on - strand at 523.060 kb on - strand at 523.060 kb on - strand at 523.060 kb on - strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.168 kb on + strand at 523.168 kb on + strand at 523.169 kb on - strand at 523.281 kb on + strand at 523.281 kb on + strand at 523.281 kb on + strand at 523.282 kb on - strand at 523.282 kb on - strand at 523.282 kb on - strand at 523.326 kb on + strand at 523.326 kb on + strand at 523.360 kb on + strand at 523.360 kb on + strand at 523.360 kb on + strand at 523.360 kb on + strand at 523.360 kb on + strand at 523.361 kb on - strand at 523.361 kb on - strand at 523.361 kb on - strand at 523.361 kb on - strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.369 kb on - strand at 523.369 kb on - strand at 523.369 kb on - strand at 523.369 kb on - strand at 523.369 kb on - strand at 523.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 521,145 + -0.9 521,145 + +0.1 521,145 + -0.5 521,148 + +0.5 521,148 + -1.1 521,149 - +0.1 521,149 - -0.5 521,181 + -0.1 521,182 - -0.1 521,202 + -0.2 521,202 + +0.9 521,203 - -1.2 521,203 - -0.2 521,203 - +0.5 521,273 - +1.1 521,357 + Pf1N1B4_439 0.44 -0.2 521,357 + Pf1N1B4_439 0.44 +0.7 521,357 + Pf1N1B4_439 0.44 +3.4 521,357 + Pf1N1B4_439 0.44 -1.5 521,358 - Pf1N1B4_439 0.44 -2.4 521,358 - Pf1N1B4_439 0.44 +1.5 521,358 - Pf1N1B4_439 0.44 +0.2 521,358 - Pf1N1B4_439 0.44 -0.9 521,358 - Pf1N1B4_439 0.44 +0.7 521,363 + Pf1N1B4_439 0.47 +0.9 521,363 + Pf1N1B4_439 0.47 -0.9 521,363 + Pf1N1B4_439 0.47 +0.1 521,364 - Pf1N1B4_439 0.47 +0.1 521,364 - Pf1N1B4_439 0.47 +0.1 521,403 - Pf1N1B4_439 0.68 -0.5 521,403 - Pf1N1B4_439 0.68 +0.9 521,406 - Pf1N1B4_439 0.69 -1.9 521,444 + Pf1N1B4_439 0.89 -0.4 521,444 + Pf1N1B4_439 0.89 +0.1 521,444 + Pf1N1B4_439 0.89 -0.9 521,444 + Pf1N1B4_439 0.89 -0.3 521,445 - -0.2 521,463 - -0.5 521,463 - -0.9 521,533 + +0.1 521,534 - +1.1 521,534 - -1.5 521,571 + +0.1 521,604 + -0.5 521,604 + +0.7 521,604 + +0.5 521,604 + -0.4 521,608 + -1.3 521,608 + +0.3 521,608 + -0.7 521,608 + +0.3 521,608 + -0.6 521,608 + -1.7 521,609 - -0.7 521,610 + -0.1 521,610 + -0.9 521,610 + -2.7 521,610 + -1.3 521,610 + +0.8 521,611 - +0.5 521,668 + -0.1 521,668 + -0.8 521,694 + -0.7 521,694 + -0.3 521,694 + +0.6 521,694 + -0.5 521,695 - -0.8 521,728 + -0.5 521,728 + -0.3 521,729 - -0.1 521,735 + +1.5 521,736 - +0.9 521,750 + -0.5 521,774 + +0.4 521,775 - -0.8 521,802 + +0.5 521,803 - -1.3 521,828 - -0.5 521,829 + -0.0 521,829 + -1.2 521,830 - -0.7 521,830 - -1.1 521,830 - -0.8 521,830 - -0.0 521,833 + -0.1 521,834 - +0.5 521,834 - -0.5 521,882 + +0.1 521,883 - +2.7 521,929 + -0.7 521,990 - +0.1 522,021 - +0.1 522,021 - +1.7 522,080 + +0.5 522,081 - +0.1 522,081 - +0.0 522,116 + -0.5 522,116 + +0.1 522,116 + -0.5 522,117 - -0.7 522,182 + Pf1N1B4_440 0.17 +0.1 522,204 + Pf1N1B4_440 0.26 -0.8 522,226 - Pf1N1B4_440 0.35 -1.5 522,226 - Pf1N1B4_440 0.35 -0.9 522,282 + +1.4 522,351 + Pf1N1B4_440 0.86 -0.5 522,351 + Pf1N1B4_440 0.86 -1.5 522,351 + Pf1N1B4_440 0.86 -0.2 522,351 + Pf1N1B4_440 0.86 +0.1 522,352 - Pf1N1B4_440 0.87 -0.9 522,352 - Pf1N1B4_440 0.87 +0.4 522,352 - Pf1N1B4_440 0.87 -1.3 522,396 + +1.1 522,476 - +0.1 522,516 + -1.2 522,517 - +0.1 522,517 - -1.5 522,517 - +1.1 522,517 - +0.3 522,660 + -1.2 522,770 - -0.8 522,770 - -1.7 522,791 + -0.7 522,791 + +0.5 522,791 + -0.9 522,792 - -0.1 522,792 - -1.1 522,792 - -1.2 522,792 - -0.1 522,831 - +0.6 523,009 + -0.5 523,055 + +0.3 523,055 + +0.3 523,055 + -0.2 523,055 + +0.3 523,055 + -1.5 523,056 - -0.7 523,056 - +1.0 523,056 - +0.6 523,059 + +0.1 523,059 + -0.3 523,059 + -1.5 523,059 + -0.2 523,059 + +0.3 523,059 + +0.6 523,059 + -1.3 523,059 + +2.4 523,059 + +1.1 523,059 + +0.9 523,059 + +0.7 523,060 - +0.1 523,060 - -0.8 523,060 - +0.2 523,060 - -0.4 523,060 - -0.2 523,156 + -1.5 523,156 + -1.6 523,156 + +0.1 523,156 + -1.7 523,156 + -0.9 523,156 + +1.4 523,156 + +1.8 523,157 - -1.2 523,157 - +0.1 523,157 - -0.7 523,157 - -1.7 523,157 - -1.1 523,157 - -1.1 523,168 + +1.7 523,168 + -1.5 523,169 - -0.1 523,281 + +1.5 523,281 + +0.5 523,281 + -0.1 523,282 - +1.5 523,282 - -0.2 523,282 - -1.5 523,326 + -0.2 523,326 + -0.9 523,360 + +1.1 523,360 + -0.7 523,360 + +0.2 523,360 + +0.3 523,360 + -0.2 523,361 - -0.4 523,361 - -2.1 523,361 - +3.4 523,361 - -0.6 523,364 + +1.1 523,364 + -0.2 523,364 + -1.5 523,364 + -0.3 523,364 + +0.1 523,364 + -0.2 523,364 + -0.3 523,364 + -0.2 523,364 + -0.7 523,364 + -0.8 523,364 + -0.1 523,364 + +0.1 523,365 - +0.1 523,365 - -0.3 523,365 - +0.2 523,365 - +0.8 523,365 - -0.5 523,365 - -0.1 523,365 - -1.5 523,365 - +1.4 523,365 - -0.3 523,365 - +1.6 523,365 - -0.1 523,365 - +0.7 523,365 - +0.1 523,365 - -0.3 523,365 - +1.1 523,368 + -0.4 523,368 + -0.7 523,368 + -1.6 523,368 + +1.1 523,368 + +0.5 523,368 + +0.7 523,369 - -0.8 523,369 - +0.1 523,369 - -0.2 523,369 - -0.3 523,369 - -0.3 523,369 - -0.9
Or see this region's nucleotide sequence