Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4032 and Pf1N1B4_4033 are separated by 9 nucleotides Pf1N1B4_4033 and Pf1N1B4_4034 are separated by 12 nucleotides Pf1N1B4_4034 and Pf1N1B4_4035 overlap by 4 nucleotides
Pf1N1B4_4032 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 4,483,456 to 4,483,959
_4032
Pf1N1B4_4033 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 4,483,969 to 4,484,514
_4033
Pf1N1B4_4034 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 4,484,527 to 4,485,534
_4034
Pf1N1B4_4035 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 4,485,531 to 4,487,990
_4035
Position (kb)
4484
4485
4486 Strain fitness (log2 ratio)
-2
-1
0
1 at 4483.634 kb on + strand, within Pf1N1B4_4032 at 4483.635 kb on - strand, within Pf1N1B4_4032 at 4484.060 kb on + strand, within Pf1N1B4_4033 at 4484.061 kb on - strand at 4484.069 kb on + strand, within Pf1N1B4_4033 at 4484.070 kb on - strand, within Pf1N1B4_4033 at 4484.070 kb on - strand, within Pf1N1B4_4033 at 4484.508 kb on - strand at 4484.508 kb on - strand at 4484.807 kb on + strand, within Pf1N1B4_4034 at 4485.124 kb on - strand, within Pf1N1B4_4034 at 4485.503 kb on - strand at 4485.742 kb on + strand at 4485.743 kb on - strand at 4485.743 kb on - strand at 4485.743 kb on - strand at 4485.743 kb on - strand at 4486.005 kb on + strand, within Pf1N1B4_4035
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,483,634 + Pf1N1B4_4032 0.35 +0.1 4,483,635 - Pf1N1B4_4032 0.36 +1.7 4,484,060 + Pf1N1B4_4033 0.17 +1.2 4,484,061 - -0.7 4,484,069 + Pf1N1B4_4033 0.18 -1.3 4,484,070 - Pf1N1B4_4033 0.18 -0.7 4,484,070 - Pf1N1B4_4033 0.18 -0.2 4,484,508 - -0.5 4,484,508 - -0.9 4,484,807 + Pf1N1B4_4034 0.28 +0.6 4,485,124 - Pf1N1B4_4034 0.59 -0.8 4,485,503 - -0.4 4,485,742 + -0.3 4,485,743 - +0.9 4,485,743 - +0.7 4,485,743 - -2.4 4,485,743 - +0.3 4,486,005 + Pf1N1B4_4035 0.19 -0.7
Or see this region's nucleotide sequence