Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3884

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
4,311,047	+				+0.4
4,311,048	-				+2.0
4,311,251	+				+1.6
4,311,252	-				+0.6
4,311,258	-				+1.0
4,311,325	-				+0.6
4,311,325	-				-0.6
4,311,397	-		Pf1N1B4_3883	0.19	-0.2
4,311,478	-		Pf1N1B4_3883	0.32	+1.8
4,311,519	+		Pf1N1B4_3883	0.39	-0.6
4,311,519	+		Pf1N1B4_3883	0.39	-0.3
4,311,520	-		Pf1N1B4_3883	0.39	-0.8
4,311,520	-		Pf1N1B4_3883	0.39	+0.3
4,311,520	-				-0.0
4,311,520	-		Pf1N1B4_3883	0.39	+0.3
4,311,639	+		Pf1N1B4_3883	0.58	+0.6
4,311,717	+		Pf1N1B4_3883	0.71	-0.0
4,311,717	+		Pf1N1B4_3883	0.71	+1.0
4,311,717	+		Pf1N1B4_3883	0.71	+1.0
4,311,717	+		Pf1N1B4_3883	0.71	+1.0
4,311,717	+		Pf1N1B4_3883	0.71	-0.8
4,311,717	+		Pf1N1B4_3883	0.71	-2.2
4,311,717	+		Pf1N1B4_3883	0.71	-1.0
4,311,718	-		Pf1N1B4_3883	0.71	+1.0
4,311,718	-		Pf1N1B4_3883	0.71	-0.0
4,311,750	+		Pf1N1B4_3883	0.77	-1.6
4,311,751	-		Pf1N1B4_3883	0.77	+0.6
4,311,970	+				+1.5
4,311,970	+				-0.3
4,311,971	-				-0.0
4,311,971	-				-0.3
4,311,971	-				+2.0
4,312,066	+		Pf1N1B4_3884	0.11	+0.3
4,312,066	+		Pf1N1B4_3884	0.11	-0.3
4,312,067	-		Pf1N1B4_3884	0.12	+2.0
4,312,067	-		Pf1N1B4_3884	0.12	+0.7
4,312,067	-		Pf1N1B4_3884	0.12	+1.0
4,312,067	-		Pf1N1B4_3884	0.12	+1.4
4,312,067	-		Pf1N1B4_3884	0.12	-1.2
4,312,144	+		Pf1N1B4_3884	0.17	-0.4
4,312,144	+				-1.0
4,312,145	-		Pf1N1B4_3884	0.17	-0.2
4,312,145	-				+1.0
4,312,145	-		Pf1N1B4_3884	0.17	-1.4
4,312,316	-		Pf1N1B4_3884	0.29	-0.3
4,312,316	-		Pf1N1B4_3884	0.29	+1.0
4,312,379	-		Pf1N1B4_3884	0.33	+0.6
4,312,430	+		Pf1N1B4_3884	0.37	-1.5
4,312,430	+		Pf1N1B4_3884	0.37	+1.3
4,312,431	-		Pf1N1B4_3884	0.37	+2.0
4,312,431	-		Pf1N1B4_3884	0.37	-1.0
4,312,431	-		Pf1N1B4_3884	0.37	-2.3
4,312,546	+		Pf1N1B4_3884	0.45	+0.2
4,312,547	-		Pf1N1B4_3884	0.45	+0.3
4,312,547	-		Pf1N1B4_3884	0.45	+0.5
4,312,577	-		Pf1N1B4_3884	0.47	+0.8
4,312,577	-		Pf1N1B4_3884	0.47	-0.0
4,312,577	-		Pf1N1B4_3884	0.47	+0.5
4,312,577	-		Pf1N1B4_3884	0.47	-0.6
4,312,577	-		Pf1N1B4_3884	0.47	-1.0
4,312,577	-		Pf1N1B4_3884	0.47	+1.0
4,312,577	-		Pf1N1B4_3884	0.47	+0.1
4,312,624	+		Pf1N1B4_3884	0.51	-0.7
4,312,624	+		Pf1N1B4_3884	0.51	-0.0
4,312,624	+		Pf1N1B4_3884	0.51	+2.0
4,312,624	+		Pf1N1B4_3884	0.51	-0.2
4,312,624	+		Pf1N1B4_3884	0.51	-0.3
4,312,657	+		Pf1N1B4_3884	0.53	+0.4
4,312,657	+		Pf1N1B4_3884	0.53	+0.3
4,312,657	+		Pf1N1B4_3884	0.53	-0.0
4,312,657	+		Pf1N1B4_3884	0.53	+2.3
4,312,658	-		Pf1N1B4_3884	0.53	+1.6
4,312,658	-		Pf1N1B4_3884	0.53	+1.0
4,312,658	-		Pf1N1B4_3884	0.53	+0.8
4,312,658	-		Pf1N1B4_3884	0.53	+1.0
4,312,660	+		Pf1N1B4_3884	0.53	-2.0
4,312,660	+		Pf1N1B4_3884	0.53	-0.6
4,312,660	+		Pf1N1B4_3884	0.53	-0.3
4,312,660	+		Pf1N1B4_3884	0.53	+2.0
4,312,661	-		Pf1N1B4_3884	0.53	-1.0
4,312,661	-		Pf1N1B4_3884	0.53	+1.0
4,312,661	-		Pf1N1B4_3884	0.53	-0.7
4,312,661	-		Pf1N1B4_3884	0.53	+0.1
4,312,661	-		Pf1N1B4_3884	0.53	-1.4
4,312,750	+		Pf1N1B4_3884	0.59	+0.1
4,312,760	-				-0.3
4,312,855	+		Pf1N1B4_3884	0.67	-1.3
4,312,855	+		Pf1N1B4_3884	0.67	-0.2
4,312,855	+		Pf1N1B4_3884	0.67	-0.0
4,312,855	+		Pf1N1B4_3884	0.67	-1.9
4,312,855	+		Pf1N1B4_3884	0.67	+0.6
4,312,855	+		Pf1N1B4_3884	0.67	+0.1
4,312,855	+		Pf1N1B4_3884	0.67	+1.3
4,312,856	-		Pf1N1B4_3884	0.67	+0.3
4,312,856	-		Pf1N1B4_3884	0.67	+2.2
4,312,856	-		Pf1N1B4_3884	0.67	+0.9
4,312,856	-		Pf1N1B4_3884	0.67	-0.2
4,312,856	-		Pf1N1B4_3884	0.67	-1.0
4,312,856	-		Pf1N1B4_3884	0.67	+0.1
4,312,856	-		Pf1N1B4_3884	0.67	-0.6
4,312,856	-		Pf1N1B4_3884	0.67	+0.4
4,312,856	-				-1.0
4,312,856	-		Pf1N1B4_3884	0.67	-0.0
4,312,906	+				+1.0
4,312,906	+		Pf1N1B4_3884	0.70	+1.5
4,312,906	+		Pf1N1B4_3884	0.70	+0.1
4,312,907	-		Pf1N1B4_3884	0.70	+1.0
4,313,086	-		Pf1N1B4_3884	0.83	-0.7
4,313,092	+		Pf1N1B4_3884	0.83	-0.6
4,313,092	+		Pf1N1B4_3884	0.83	-1.6
4,313,092	+		Pf1N1B4_3884	0.83	+0.4
4,313,093	-		Pf1N1B4_3884	0.84	-0.6
4,313,093	-		Pf1N1B4_3884	0.84	-1.1
4,313,093	-		Pf1N1B4_3884	0.84	+0.4
4,313,093	-		Pf1N1B4_3884	0.84	-1.0
4,313,144	+		Pf1N1B4_3884	0.87	-2.5
4,313,144	+		Pf1N1B4_3884	0.87	+0.3
4,313,270	+				-2.5
4,313,270	+				+0.6
4,313,296	+				-1.6
4,313,296	+				+0.8
4,313,297	-				+0.4
4,313,297	-				-0.2
4,313,297	-				-0.3
4,313,297	-				+1.0
4,313,297	-				+1.6
4,313,302	+				+1.6
4,313,315	+				+1.0
4,313,315	+				-1.3
4,313,315	+				+1.0
4,313,315	+				+1.0
4,313,315	+				+1.0
4,313,376	-				-0.1
4,313,409	+				-0.0
4,313,409	+				-1.2
4,313,409	+				+0.3
4,313,411	+				+0.8
4,313,411	+				-0.4
4,313,411	+				-0.3
4,313,411	+				+1.3
4,313,412	-				+0.1
4,313,412	-				-1.7
4,313,412	-				-1.2
4,313,412	-				-1.0
4,313,412	-				+0.6
4,313,412	-				-2.0
4,313,412	-				+1.3
4,313,412	-				-0.0
4,313,420	+				-0.6
4,313,421	-				+1.2
4,313,649	+		Pf1N1B4_3885	0.31	+0.2
4,313,649	+		Pf1N1B4_3885	0.31	-0.3
4,313,730	+		Pf1N1B4_3885	0.43	+0.3
4,313,730	+		Pf1N1B4_3885	0.43	+1.3
4,313,730	+		Pf1N1B4_3885	0.43	-2.0
4,313,730	+		Pf1N1B4_3885	0.43	+0.4
4,313,730	+		Pf1N1B4_3885	0.43	+1.0
4,313,731	-		Pf1N1B4_3885	0.44	-0.3
4,313,731	-				-0.6
4,313,731	-		Pf1N1B4_3885	0.44	+0.7
4,313,731	-		Pf1N1B4_3885	0.44	+0.1
4,313,731	-		Pf1N1B4_3885	0.44	-0.3
4,313,859	+		Pf1N1B4_3885	0.62	+1.0
4,313,859	+		Pf1N1B4_3885	0.62	-0.0
4,313,859	+		Pf1N1B4_3885	0.62	-1.2
4,313,977	-		Pf1N1B4_3885	0.80	-0.5
4,313,977	-		Pf1N1B4_3885	0.80	-0.0
4,314,056	+				-0.2
4,314,057	-				+0.6
4,314,177	+				-1.0
4,314,205	+				-0.6
4,314,206	-				+1.6
4,314,269	+				-0.7
4,314,316	+				-0.8
4,314,316	+				-2.2
4,314,317	-				+0.1