Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2826

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
3,170,069	+				+1.3
3,170,072	+				+1.3
3,170,072	+				-0.4
3,170,072	+				-1.3
3,170,176	+				-0.3
3,170,176	+				+0.3
3,170,176	+				-0.3
3,170,176	+				-0.0
3,170,177	-				+0.7
3,170,177	-				-0.4
3,170,177	-				+0.2
3,170,177	-				-2.3
3,170,180	+				-0.7
3,170,180	+				-0.3
3,170,180	+				+0.3
3,170,180	+				+0.7
3,170,181	-				-0.3
3,170,181	-				+0.2
3,170,181	-				-0.9
3,170,181	-				+0.8
3,170,181	-				-1.9
3,170,236	+		Pf1N1B4_2825	0.15	-1.3
3,170,237	-		Pf1N1B4_2825	0.15	+0.7
3,170,237	-		Pf1N1B4_2825	0.15	+2.9
3,170,237	-		Pf1N1B4_2825	0.15	+0.5
3,170,237	-		Pf1N1B4_2825	0.15	+0.8
3,170,237	-		Pf1N1B4_2825	0.15	-0.7
3,170,237	-		Pf1N1B4_2825	0.15	-0.4
3,170,237	-		Pf1N1B4_2825	0.15	-1.1
3,170,418	-		Pf1N1B4_2825	0.60	-1.3
3,170,418	-		Pf1N1B4_2825	0.60	+1.3
3,170,418	-		Pf1N1B4_2825	0.60	-1.0
3,170,461	+		Pf1N1B4_2825	0.71	+0.9
3,170,462	-		Pf1N1B4_2825	0.71	+0.7
3,170,462	-		Pf1N1B4_2825	0.71	-0.8
3,170,562	-				+0.6
3,170,577	+				-0.8
3,170,578	-				+0.4
3,170,578	-				-0.0
3,170,578	-				-0.3
3,170,699	-				-0.0
3,170,724	+				-2.6
3,170,724	+				+0.0
3,170,724	+				-0.4
3,170,724	+				-0.1
3,170,753	+				+0.9
3,170,753	+				-0.7
3,170,753	+				-1.0
3,170,754	-				-0.0
3,170,869	+				-1.5
3,170,899	+				-0.3
3,170,903	+				-0.1
3,170,904	-				+0.6
3,170,904	-				+0.2
3,170,919	-				+0.7
3,170,919	-				-0.8
3,170,996	+				-0.3
3,170,996	+				-0.0
3,170,997	-				-1.3
3,170,998	+				+0.3
3,170,998	+				-0.1
3,170,998	+				-0.3
3,170,998	+				+0.6
3,170,999	-				+0.8
3,170,999	-				-1.3
3,170,999	-				-1.3
3,170,999	-				-0.0
3,170,999	-				+0.3
3,171,020	+				-0.3
3,171,028	+				-0.3
3,171,029	-				-1.0
3,171,033	-				+1.3
3,171,033	-				+0.7
3,171,033	-				-1.7
3,171,134	+		Pf1N1B4_2826	0.17	-0.3
3,171,135	-		Pf1N1B4_2826	0.17	-1.9
3,171,135	-		Pf1N1B4_2826	0.17	+0.3
3,171,143	+		Pf1N1B4_2826	0.17	-0.6
3,171,144	-		Pf1N1B4_2826	0.17	-0.9
3,171,144	-		Pf1N1B4_2826	0.17	+1.3
3,171,144	-		Pf1N1B4_2826	0.17	-0.8
3,171,149	+		Pf1N1B4_2826	0.18	+0.4
3,171,149	+		Pf1N1B4_2826	0.18	-0.4
3,171,150	-		Pf1N1B4_2826	0.18	+1.0
3,171,150	-		Pf1N1B4_2826	0.18	-1.1
3,171,150	-		Pf1N1B4_2826	0.18	+1.8
3,171,150	-		Pf1N1B4_2826	0.18	-1.9
3,171,329	-		Pf1N1B4_2826	0.32	+0.1
3,171,329	-		Pf1N1B4_2826	0.32	+0.3
3,171,522	+		Pf1N1B4_2826	0.47	+0.6
3,171,522	+		Pf1N1B4_2826	0.47	+0.7
3,171,523	-		Pf1N1B4_2826	0.47	+0.2
3,171,523	-		Pf1N1B4_2826	0.47	+0.2
3,171,523	-		Pf1N1B4_2826	0.47	+0.3
3,171,523	-		Pf1N1B4_2826	0.47	-1.3
3,171,588	+		Pf1N1B4_2826	0.52	+0.1
3,171,626	+		Pf1N1B4_2826	0.55	-0.4
3,171,752	+		Pf1N1B4_2826	0.64	-0.3
3,171,881	+		Pf1N1B4_2826	0.74	-1.4
3,171,926	+		Pf1N1B4_2826	0.78	-0.3
3,171,926	+		Pf1N1B4_2826	0.78	+0.4
3,171,976	-		Pf1N1B4_2826	0.82	+0.5
3,172,022	+		Pf1N1B4_2826	0.85	+1.3
3,172,022	+		Pf1N1B4_2826	0.85	+1.1
3,172,022	+		Pf1N1B4_2826	0.85	-0.8
3,172,022	+		Pf1N1B4_2826	0.85	-0.4
3,172,022	+		Pf1N1B4_2826	0.85	+0.7
3,172,022	+		Pf1N1B4_2826	0.85	+0.6
3,172,023	-		Pf1N1B4_2826	0.85	+0.3
3,172,023	-		Pf1N1B4_2826	0.85	-0.4
3,172,023	-				-1.0
3,172,023	-		Pf1N1B4_2826	0.85	-0.8
3,172,023	-		Pf1N1B4_2826	0.85	-1.1
3,172,023	-		Pf1N1B4_2826	0.85	+1.3
3,172,023	-		Pf1N1B4_2826	0.85	+0.9
3,172,117	+				-2.3
3,172,117	+				+0.8
3,172,117	+				-0.9
3,172,117	+				-0.3
3,172,117	+				+1.3
3,172,117	+				-0.1
3,172,117	+				+0.1
3,172,117	+				+0.9
3,172,117	+				-0.4
3,172,117	+				+0.1
3,172,117	+				-0.6
3,172,117	+				+0.4
3,172,118	-				-0.1
3,172,118	-				+0.5
3,172,118	-				-0.5
3,172,118	-				-0.9
3,172,118	-				+0.5
3,172,203	+				+0.7
3,172,203	+				-0.8
3,172,204	-				+0.9
3,172,204	-				+1.1
3,172,204	-				-0.7
3,172,221	+				-0.1
3,172,253	+				-0.3
3,172,253	+				-0.7
3,172,279	+				+0.3
3,172,280	-				+0.1
3,172,280	-				-0.2
3,172,289	+				-0.1
3,172,290	-				-1.5
3,172,296	+		Pf1N1B4_2827	0.11	+0.1
3,172,297	-		Pf1N1B4_2827	0.12	-0.4
3,172,297	-		Pf1N1B4_2827	0.12	-1.5
3,172,315	+		Pf1N1B4_2827	0.22	+0.3
3,172,316	-		Pf1N1B4_2827	0.23	-1.0
3,172,403	+		Pf1N1B4_2827	0.73	-0.5
3,172,449	+				+0.9
3,172,450	-				-0.4
3,172,466	-				-0.1
3,172,466	-				-2.1
3,172,483	+				+1.3
3,172,483	+				-0.4
3,172,484	-				+0.3
3,172,484	-				+1.3
3,172,484	-				-0.3
3,172,536	+				-0.3
3,172,536	+				+1.1
3,172,536	+				+0.5
3,172,537	-				+0.6
3,172,537	-				+0.0
3,172,537	-				+1.3
3,172,537	-				-1.3
3,172,537	-				+0.8
3,172,537	-				-0.3
3,172,537	-				-0.3
3,172,537	-				-1.0
3,172,537	-				+0.1
3,172,537	-				+0.5
3,172,572	+				+0.6
3,172,572	+				-0.6
3,172,573	-				+1.2
3,172,573	-				-0.1
3,172,573	-				+2.3
3,172,743	-		Pf1N1B4_2828	0.22	+0.8
3,172,743	-		Pf1N1B4_2828	0.22	-1.0
3,172,847	+		Pf1N1B4_2828	0.39	+0.1
3,172,847	+		Pf1N1B4_2828	0.39	-0.0
3,172,848	-		Pf1N1B4_2828	0.39	-1.1
3,172,936	+		Pf1N1B4_2828	0.53	-0.8
3,173,209	+				-0.1
3,173,210	-				+0.3
3,173,210	-				+0.2
3,173,213	+				+0.2
3,173,214	-				+0.1
3,173,214	-				+0.3
3,173,214	-				+0.7