Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1410 and Pf1N1B4_1411 are separated by 96 nucleotides Pf1N1B4_1411 and Pf1N1B4_1412 are separated by 12 nucleotides Pf1N1B4_1412 and Pf1N1B4_1413 are separated by 94 nucleotides
Pf1N1B4_1410 - HflK protein, at 1,618,117 to 1,619,289
_1410
Pf1N1B4_1411 - GTP-binding protein HflX, at 1,619,386 to 1,620,687
_1411
Pf1N1B4_1412 - RNA-binding protein Hfq, at 1,620,700 to 1,620,960
_1412
Pf1N1B4_1413 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 1,621,055 to 1,622,026
_1413
Position (kb)
1619
1620
1621 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1618.896 kb on - strand, within Pf1N1B4_1410 at 1619.344 kb on - strand at 1619.739 kb on - strand, within Pf1N1B4_1411 at 1619.739 kb on - strand, within Pf1N1B4_1411 at 1619.739 kb on - strand, within Pf1N1B4_1411 at 1619.739 kb on - strand, within Pf1N1B4_1411 at 1619.739 kb on - strand, within Pf1N1B4_1411 at 1619.739 kb on - strand, within Pf1N1B4_1411 at 1619.741 kb on - strand, within Pf1N1B4_1411 at 1619.741 kb on - strand, within Pf1N1B4_1411 at 1619.995 kb on - strand, within Pf1N1B4_1411 at 1620.072 kb on - strand, within Pf1N1B4_1411 at 1620.072 kb on - strand, within Pf1N1B4_1411 at 1620.415 kb on - strand, within Pf1N1B4_1411 at 1620.987 kb on - strand at 1620.996 kb on - strand at 1620.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,618,896 - Pf1N1B4_1410 0.66 +1.1 1,619,344 - -2.1 1,619,739 - Pf1N1B4_1411 0.27 +2.2 1,619,739 - Pf1N1B4_1411 0.27 +0.5 1,619,739 - Pf1N1B4_1411 0.27 +0.3 1,619,739 - Pf1N1B4_1411 0.27 +0.5 1,619,739 - Pf1N1B4_1411 0.27 +0.6 1,619,739 - Pf1N1B4_1411 0.27 -0.4 1,619,741 - Pf1N1B4_1411 0.27 +0.5 1,619,741 - Pf1N1B4_1411 0.27 -0.9 1,619,995 - Pf1N1B4_1411 0.47 +0.6 1,620,072 - Pf1N1B4_1411 0.53 -1.1 1,620,072 - Pf1N1B4_1411 0.53 +2.5 1,620,415 - Pf1N1B4_1411 0.79 +0.5 1,620,987 - +0.8 1,620,996 - -1.1 1,620,996 - -0.9
Or see this region's nucleotide sequence