Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05395

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,162,329	-				-0.2
1,162,412	+				-0.1
1,162,412	+				+1.0
1,162,412	+				-0.4
1,162,413	-				-0.4
1,162,413	-				-1.4
1,162,413	-				-0.9
1,162,413	-				-1.7
1,162,413	-				+0.1
1,162,491	+				+0.3
1,162,514	+				+0.6
1,162,514	+				+0.5
1,162,514	+				+0.7
1,162,514	+				+0.1
1,162,514	+				+0.0
1,162,514	+				+0.2
1,162,515	-				-0.5
1,162,515	-				-0.6
1,162,519	+				-1.6
1,162,519	+				-0.3
1,162,519	+				-0.6
1,162,519	+				-2.0
1,162,519	+				-0.5
1,162,519	+				-0.0
1,162,520	-				-0.1
1,162,520	-				+0.9
1,162,520	-				-1.2
1,162,520	-				+0.3
1,162,520	-				+0.2
1,162,520	-				+0.4
1,162,544	+				-0.1
1,162,544	+				-0.2
1,162,544	+				+0.4
1,162,544	+				+0.1
1,162,544	+				-0.0
1,162,544	+				+0.0
1,162,545	-				+0.2
1,162,545	-				-0.2
1,162,545	-				-0.1
1,162,545	-				-1.4
1,162,545	-				-0.5
1,162,545	-				-0.1
1,162,545	-				+0.5
1,162,805	+		LRK54_RS05395	0.26	+0.6
1,162,805	+		LRK54_RS05395	0.26	+0.7
1,162,805	+		LRK54_RS05395	0.26	+0.1
1,162,805	+		LRK54_RS05395	0.26	-0.4
1,162,805	+		LRK54_RS05395	0.26	-0.4
1,162,805	+		LRK54_RS05395	0.26	-0.6
1,162,805	+		LRK54_RS05395	0.26	-0.4
1,162,806	-		LRK54_RS05395	0.26	-0.0
1,162,856	+		LRK54_RS05395	0.31	-0.3
1,162,856	+		LRK54_RS05395	0.31	-0.4
1,162,856	+		LRK54_RS05395	0.31	+0.1
1,162,856	+		LRK54_RS05395	0.31	-0.9
1,162,856	+		LRK54_RS05395	0.31	-0.5
1,162,856	+		LRK54_RS05395	0.31	+0.8
1,162,856	+		LRK54_RS05395	0.31	+0.6
1,162,856	+		LRK54_RS05395	0.31	+0.1
1,162,856	+		LRK54_RS05395	0.31	+0.1
1,162,856	+		LRK54_RS05395	0.31	+0.5
1,162,856	+		LRK54_RS05395	0.31	-0.1
1,162,856	+		LRK54_RS05395	0.31	-0.7
1,162,856	+		LRK54_RS05395	0.31	+0.5
1,162,856	+		LRK54_RS05395	0.31	-0.9
1,162,856	+		LRK54_RS05395	0.31	-0.1
1,162,857	-		LRK54_RS05395	0.31	+0.0
1,162,857	-		LRK54_RS05395	0.31	-0.1
1,162,857	-		LRK54_RS05395	0.31	-0.0
1,162,857	-		LRK54_RS05395	0.31	+0.9
1,162,857	-		LRK54_RS05395	0.31	+0.5
1,162,857	-		LRK54_RS05395	0.31	+1.1
1,162,857	-		LRK54_RS05395	0.31	+0.5
1,162,857	-		LRK54_RS05395	0.31	+0.1
1,162,857	-		LRK54_RS05395	0.31	-1.0
1,162,857	-		LRK54_RS05395	0.31	-0.7
1,162,857	-		LRK54_RS05395	0.31	+0.0
1,162,857	-		LRK54_RS05395	0.31	-1.2
1,162,857	-		LRK54_RS05395	0.31	-1.0
1,162,905	+		LRK54_RS05395	0.36	+0.3
1,162,905	+		LRK54_RS05395	0.36	-1.2
1,162,905	+		LRK54_RS05395	0.36	-0.3
1,162,905	+		LRK54_RS05395	0.36	+0.4
1,162,906	-		LRK54_RS05395	0.36	-0.1
1,162,906	-		LRK54_RS05395	0.36	+0.2
1,162,919	+		LRK54_RS05395	0.37	-0.4
1,162,919	+		LRK54_RS05395	0.37	-0.3
1,162,919	+		LRK54_RS05395	0.37	+0.1
1,162,919	+		LRK54_RS05395	0.37	-0.1
1,162,920	-		LRK54_RS05395	0.37	+1.0
1,162,920	-		LRK54_RS05395	0.37	-0.7
1,162,920	-		LRK54_RS05395	0.37	+0.4
1,162,920	-		LRK54_RS05395	0.37	+0.0
1,163,366	+		LRK54_RS05395	0.82	+0.1
1,163,367	-		LRK54_RS05395	0.82	-0.7
1,163,432	+		LRK54_RS05395	0.89	-0.5
1,163,432	+		LRK54_RS05395	0.89	-1.2
1,163,433	-		LRK54_RS05395	0.89	-0.5
1,163,433	-		LRK54_RS05395	0.89	-0.2
1,163,433	-		LRK54_RS05395	0.89	-0.4
1,163,495	+				-1.2
1,163,495	+				+0.6
1,163,495	+				+0.2
1,163,495	+				-0.7
1,163,495	+				-0.0
1,163,495	+				+0.5
1,163,495	+				-0.4
1,163,495	+				-0.7
1,163,495	+				+0.2
1,163,495	+				+0.0
1,163,495	+				-0.8
1,163,495	+				-0.9
1,163,495	+				+1.2
1,163,495	+				+1.4
1,163,495	+				+0.5
1,163,495	+				+0.5
1,163,495	+				-0.1
1,163,495	+				-0.2
1,163,495	+				+0.2
1,163,495	+				+0.2
1,163,495	+				-0.1
1,163,495	+				-0.5
1,163,496	-				-0.1
1,163,496	-				+0.9
1,163,496	-				-1.5
1,163,496	-				-0.6
1,163,496	-				-0.6
1,163,496	-				-0.7
1,163,496	-				-0.5
1,163,496	-				-0.3
1,163,496	-				-0.2
1,163,496	-				+0.7
1,163,496	-				-1.2
1,163,496	-				-1.0
1,163,496	-				-2.1
1,163,496	-				-0.4
1,163,496	-				+0.4
1,163,496	-				+1.0
1,163,496	-				-0.7
1,163,496	-				-0.1
1,163,496	-				+0.1
1,163,496	-				+0.2
1,163,496	-				+0.0
1,163,496	-				-0.1
1,163,496	-				-0.7
1,163,496	-				+0.4
1,163,713	+		LRK54_RS05400	0.32	+0.7
1,163,713	+		LRK54_RS05400	0.32	-0.6
1,163,713	+		LRK54_RS05400	0.32	-0.2
1,163,713	+		LRK54_RS05400	0.32	+1.3
1,163,713	+		LRK54_RS05400	0.32	+0.3
1,163,713	+		LRK54_RS05400	0.32	-0.0
1,163,714	-		LRK54_RS05400	0.32	-1.4
1,163,714	-		LRK54_RS05400	0.32	-0.4
1,163,733	+		LRK54_RS05400	0.36	+1.1
1,163,733	+		LRK54_RS05400	0.36	+0.0
1,163,733	+		LRK54_RS05400	0.36	+0.0
1,163,733	+		LRK54_RS05400	0.36	+0.4
1,163,733	+		LRK54_RS05400	0.36	-0.5
1,163,734	-		LRK54_RS05400	0.36	+0.3
1,163,734	-		LRK54_RS05400	0.36	+0.1
1,163,734	-		LRK54_RS05400	0.36	+1.4
1,164,001	+				+0.1
1,164,002	-				-0.0
1,164,009	+				-0.9
1,164,009	+				-0.7
1,164,009	+				+0.1
1,164,009	+				-1.6
1,164,009	+				-1.7
1,164,009	+				-0.4
1,164,010	-				-0.6
1,164,010	-				-0.2
1,164,010	-				-0.1
1,164,010	-				+0.6
1,164,010	-				+0.4
1,164,010	-				-0.6
1,164,010	-				-0.4
1,164,010	-				-0.1
1,164,010	-				+0.1
1,164,010	-				-0.4
1,164,010	-				+0.3
1,164,010	-				-0.7
1,164,252	+				-0.7
1,164,252	+				+0.1
1,164,253	-				+0.5
1,164,253	-				-2.2
1,164,253	-				-0.0
1,164,253	-				-2.0
1,164,381	+		LRK54_RS05405	0.12	-0.0
1,164,381	+		LRK54_RS05405	0.12	-0.2
1,164,381	+		LRK54_RS05405	0.12	-0.1
1,164,381	+		LRK54_RS05405	0.12	-1.6
1,164,381	+		LRK54_RS05405	0.12	-0.7
1,164,381	+		LRK54_RS05405	0.12	-0.3
1,164,381	+		LRK54_RS05405	0.12	-0.1
1,164,381	+		LRK54_RS05405	0.12	-1.3
1,164,381	+		LRK54_RS05405	0.12	+0.9
1,164,381	+		LRK54_RS05405	0.12	-0.4
1,164,381	+		LRK54_RS05405	0.12	-1.0
1,164,381	+		LRK54_RS05405	0.12	-0.2
1,164,381	+		LRK54_RS05405	0.12	-0.8
1,164,382	-		LRK54_RS05405	0.12	-0.6
1,164,382	-		LRK54_RS05405	0.12	+0.2
1,164,382	-		LRK54_RS05405	0.12	-0.1
1,164,382	-		LRK54_RS05405	0.12	-0.6
1,164,382	-		LRK54_RS05405	0.12	-2.1
1,164,382	-		LRK54_RS05405	0.12	-0.1
1,164,382	-		LRK54_RS05405	0.12	-0.9
1,164,491	+		LRK54_RS05405	0.16	+0.1
1,164,491	+		LRK54_RS05405	0.16	+1.5
1,164,492	-		LRK54_RS05405	0.16	+0.3
1,164,492	-		LRK54_RS05405	0.16	-0.4
1,164,492	-		LRK54_RS05405	0.16	+0.2