Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00400

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
86,268	-		LRK54_RS00395	0.19	+0.3
86,268	-		LRK54_RS00395	0.19	-0.3
86,268	-		LRK54_RS00395	0.19	+1.5
86,574	-		LRK54_RS00395	0.47	+1.0
86,574	-		LRK54_RS00395	0.47	+0.6
86,796	-		LRK54_RS00395	0.68	+1.8
87,003	-		LRK54_RS00395	0.87	-0.2
87,003	-		LRK54_RS00395	0.87	-0.2
87,003	-		LRK54_RS00395	0.87	-0.3
87,003	-		LRK54_RS00395	0.87	-1.1
87,296	+				-1.4
87,296	+				-0.5
87,296	+				-1.7
87,296	+				-0.1
87,296	+				+0.4
87,296	+				-0.6
87,296	+				+0.6
87,296	+				+1.5
87,296	+				+0.3
87,296	+				-2.3
87,296	+				-0.2
87,297	-				+0.2
87,297	-				-0.0
87,297	-				+0.0
87,297	-				+1.0
87,297	-				-1.2
87,297	-				-0.8
87,455	+		LRK54_RS00400	0.21	-0.4
87,455	+		LRK54_RS00400	0.21	-0.2
87,455	+		LRK54_RS00400	0.21	-1.1
87,456	-		LRK54_RS00400	0.21	-1.3
87,456	-		LRK54_RS00400	0.21	-0.3
87,456	-		LRK54_RS00400	0.21	+1.8
87,456	-		LRK54_RS00400	0.21	-1.0
87,456	-		LRK54_RS00400	0.21	+0.2
87,458	+		LRK54_RS00400	0.22	+0.6
87,459	-		LRK54_RS00400	0.22	-0.6
87,459	-		LRK54_RS00400	0.22	-0.6
87,485	+		LRK54_RS00400	0.24	+0.2
87,485	+		LRK54_RS00400	0.24	+1.1
87,485	+		LRK54_RS00400	0.24	+0.6
87,485	+		LRK54_RS00400	0.24	+0.1
87,486	-		LRK54_RS00400	0.24	+1.6
87,486	-		LRK54_RS00400	0.24	-0.4
87,486	-		LRK54_RS00400	0.24	-1.0
87,486	-		LRK54_RS00400	0.24	+0.5
87,486	-		LRK54_RS00400	0.24	-0.0
87,486	-		LRK54_RS00400	0.24	-0.7
87,486	-		LRK54_RS00400	0.24	+2.0
87,486	-		LRK54_RS00400	0.24	-0.4
87,486	-		LRK54_RS00400	0.24	+0.6
87,525	+		LRK54_RS00400	0.28	-1.6
87,575	+		LRK54_RS00400	0.32	-0.1
87,575	+		LRK54_RS00400	0.32	-0.2
87,575	+		LRK54_RS00400	0.32	+0.2
87,575	+		LRK54_RS00400	0.32	-0.9
87,575	+		LRK54_RS00400	0.32	+0.5
87,575	+		LRK54_RS00400	0.32	-0.1
87,575	+		LRK54_RS00400	0.32	-0.7
87,575	+		LRK54_RS00400	0.32	+0.8
87,575	+		LRK54_RS00400	0.32	+2.6
87,576	-		LRK54_RS00400	0.32	+0.1
87,576	-		LRK54_RS00400	0.32	+0.4
87,576	-		LRK54_RS00400	0.32	+0.2
87,576	-		LRK54_RS00400	0.32	+0.2
87,576	-		LRK54_RS00400	0.32	-1.0
87,576	-		LRK54_RS00400	0.32	-0.1
87,576	-		LRK54_RS00400	0.32	-0.9
87,576	-		LRK54_RS00400	0.32	-0.2
87,632	+		LRK54_RS00400	0.38	-1.2
87,632	+		LRK54_RS00400	0.38	+0.1
87,633	-		LRK54_RS00400	0.38	+0.4
87,633	-		LRK54_RS00400	0.38	-0.9
87,737	+		LRK54_RS00400	0.47	+0.4
87,737	+		LRK54_RS00400	0.47	+0.3
87,737	+		LRK54_RS00400	0.47	-0.0
87,737	+		LRK54_RS00400	0.47	-0.9
87,737	+		LRK54_RS00400	0.47	+1.0
87,738	-		LRK54_RS00400	0.47	+0.6
87,738	-		LRK54_RS00400	0.47	+0.2
87,738	-		LRK54_RS00400	0.47	+1.4
87,738	-		LRK54_RS00400	0.47	-0.7
87,738	-		LRK54_RS00400	0.47	+0.3
87,738	-		LRK54_RS00400	0.47	+0.9
87,738	-		LRK54_RS00400	0.47	+0.1
87,872	+		LRK54_RS00400	0.60	-0.4
87,872	+		LRK54_RS00400	0.60	-0.1
87,872	+		LRK54_RS00400	0.60	-0.5
87,872	+		LRK54_RS00400	0.60	-0.2
87,872	+		LRK54_RS00400	0.60	+0.3
87,872	+		LRK54_RS00400	0.60	-1.7
87,872	+		LRK54_RS00400	0.60	+2.1
87,872	+		LRK54_RS00400	0.60	-1.3
87,872	+		LRK54_RS00400	0.60	-0.6
87,873	-		LRK54_RS00400	0.60	+0.3
87,873	-		LRK54_RS00400	0.60	+1.2
87,873	-		LRK54_RS00400	0.60	-0.9
87,873	-		LRK54_RS00400	0.60	+1.1
87,881	+		LRK54_RS00400	0.60	+0.7
87,881	+		LRK54_RS00400	0.60	-0.2
87,881	+		LRK54_RS00400	0.60	+0.2
87,881	+		LRK54_RS00400	0.60	-0.4
87,881	+		LRK54_RS00400	0.60	-0.0
87,882	-		LRK54_RS00400	0.61	+1.2
87,882	-		LRK54_RS00400	0.61	+1.1
87,882	-		LRK54_RS00400	0.61	-0.8
87,882	-		LRK54_RS00400	0.61	-0.4
87,882	-		LRK54_RS00400	0.61	+1.0
87,882	-		LRK54_RS00400	0.61	-0.6
87,882	-		LRK54_RS00400	0.61	+0.4
87,882	-		LRK54_RS00400	0.61	+0.2
87,882	-		LRK54_RS00400	0.61	-0.4
87,932	+		LRK54_RS00400	0.65	+1.1
87,932	+		LRK54_RS00400	0.65	-0.9
87,933	-		LRK54_RS00400	0.65	+0.1
87,933	-		LRK54_RS00400	0.65	-0.9
87,933	-		LRK54_RS00400	0.65	-0.6
87,933	-		LRK54_RS00400	0.65	+0.6
87,974	+		LRK54_RS00400	0.69	-0.4
87,974	+		LRK54_RS00400	0.69	-0.7
87,974	+		LRK54_RS00400	0.69	+0.9
87,974	+		LRK54_RS00400	0.69	+1.2
87,974	+		LRK54_RS00400	0.69	-1.8
87,974	+		LRK54_RS00400	0.69	+0.3
87,974	+		LRK54_RS00400	0.69	+0.2
87,974	+		LRK54_RS00400	0.69	-0.8
87,974	+		LRK54_RS00400	0.69	+0.0
87,974	+		LRK54_RS00400	0.69	-0.6
87,974	+		LRK54_RS00400	0.69	+0.6
87,974	+		LRK54_RS00400	0.69	-0.1
87,974	+		LRK54_RS00400	0.69	+2.7
87,974	+		LRK54_RS00400	0.69	+0.5
87,975	-		LRK54_RS00400	0.69	-1.3
87,975	-		LRK54_RS00400	0.69	-1.0
87,975	-		LRK54_RS00400	0.69	-0.4
87,975	-		LRK54_RS00400	0.69	-0.5
87,975	-		LRK54_RS00400	0.69	-1.2
87,975	-		LRK54_RS00400	0.69	-1.0
87,975	-		LRK54_RS00400	0.69	-0.9
87,975	-		LRK54_RS00400	0.69	-0.4
87,975	-		LRK54_RS00400	0.69	-1.3
87,975	-		LRK54_RS00400	0.69	-0.3
87,975	-		LRK54_RS00400	0.69	-1.3
87,975	-		LRK54_RS00400	0.69	+0.6
87,975	-		LRK54_RS00400	0.69	-0.0
88,025	+		LRK54_RS00400	0.74	-1.1
88,025	+		LRK54_RS00400	0.74	-1.1
88,025	+		LRK54_RS00400	0.74	-0.9
88,025	+		LRK54_RS00400	0.74	-1.8
88,025	+		LRK54_RS00400	0.74	-1.1
88,025	+		LRK54_RS00400	0.74	-0.7
88,025	+		LRK54_RS00400	0.74	-0.7
88,025	+		LRK54_RS00400	0.74	+1.6
88,025	+		LRK54_RS00400	0.74	+0.7
88,025	+		LRK54_RS00400	0.74	+0.1
88,026	-		LRK54_RS00400	0.74	-0.7
88,026	-		LRK54_RS00400	0.74	+0.0
88,026	-		LRK54_RS00400	0.74	-0.9
88,026	-		LRK54_RS00400	0.74	-0.2
88,026	-		LRK54_RS00400	0.74	-0.0
88,026	-		LRK54_RS00400	0.74	+1.3
88,026	-		LRK54_RS00400	0.74	-0.2
88,026	-		LRK54_RS00400	0.74	-0.3
88,112	+		LRK54_RS00400	0.82	-0.2
88,112	+		LRK54_RS00400	0.82	+0.5
88,112	+		LRK54_RS00400	0.82	-1.4
88,112	+		LRK54_RS00400	0.82	-0.2
88,112	+		LRK54_RS00400	0.82	-0.2
88,112	+		LRK54_RS00400	0.82	-0.6
88,112	+		LRK54_RS00400	0.82	+0.8
88,112	+		LRK54_RS00400	0.82	-0.4
88,113	-		LRK54_RS00400	0.82	-0.7
88,113	-		LRK54_RS00400	0.82	-0.3
88,113	-		LRK54_RS00400	0.82	+0.7
88,123	+		LRK54_RS00400	0.83	+0.7
88,123	+		LRK54_RS00400	0.83	-0.9
88,123	+		LRK54_RS00400	0.83	-2.5
88,258	+				-0.5
88,259	-				-0.9
88,347	+				-1.4
88,347	+				+1.2
88,348	-				-1.3
88,348	-				-1.0
88,348	-				+0.6
88,767	-		LRK54_RS00405	0.51	-0.5
88,953	+		LRK54_RS00405	0.75	-1.0
88,953	+		LRK54_RS00405	0.75	-0.8
88,953	+		LRK54_RS00405	0.75	-0.4
88,953	+		LRK54_RS00405	0.75	-0.5
88,953	+		LRK54_RS00405	0.75	+0.2
88,953	+		LRK54_RS00405	0.75	-2.1
88,953	+		LRK54_RS00405	0.75	-1.9
88,953	+		LRK54_RS00405	0.75	-0.2
88,953	+		LRK54_RS00405	0.75	-0.4
88,953	+		LRK54_RS00405	0.75	+0.3
88,953	+		LRK54_RS00405	0.75	-0.5
88,953	+		LRK54_RS00405	0.75	-1.1
88,953	+		LRK54_RS00405	0.75	-1.4
88,953	+		LRK54_RS00405	0.75	+0.4
88,953	+		LRK54_RS00405	0.75	-1.3
88,953	+		LRK54_RS00405	0.75	-0.6
88,953	+		LRK54_RS00405	0.75	-0.2
88,954	-		LRK54_RS00405	0.75	-1.4
88,954	-		LRK54_RS00405	0.75	-1.7
88,954	-		LRK54_RS00405	0.75	-0.8
88,954	-		LRK54_RS00405	0.75	-1.8
88,954	-		LRK54_RS00405	0.75	-3.4
88,954	-		LRK54_RS00405	0.75	-2.2
88,954	-		LRK54_RS00405	0.75	+0.5
88,954	-		LRK54_RS00405	0.75	-1.3
88,954	-		LRK54_RS00405	0.75	+0.1
88,954	-		LRK54_RS00405	0.75	-2.0
88,954	-		LRK54_RS00405	0.75	-1.4
88,954	-		LRK54_RS00405	0.75	-1.5
88,954	-		LRK54_RS00405	0.75	-1.6
88,954	-		LRK54_RS00405	0.75	-1.9
88,954	-		LRK54_RS00405	0.75	-2.2
88,954	-		LRK54_RS00405	0.75	+0.2
88,954	-		LRK54_RS00405	0.75	+0.3
88,954	-		LRK54_RS00405	0.75	-1.8
88,954	-		LRK54_RS00405	0.75	-1.3
88,954	-		LRK54_RS00405	0.75	-1.4
89,012	-		LRK54_RS00405	0.83	+0.7
89,071	+				-1.5
89,071	+				-1.2
89,134	+				+1.2
89,135	-				-2.4
89,135	-				+0.1
89,171	+				+1.1
89,171	+				-0.1
89,171	+				-0.7
89,171	+				+0.1
89,171	+				-0.7
89,171	+				-1.7
89,171	+				-0.4
89,171	+				-1.7
89,171	+				+0.1
89,171	+				-0.6
89,171	+				+0.4
89,171	+				-1.6
89,172	-				+0.5
89,172	-				-1.2
89,172	-				-0.2
89,172	-				-0.6
89,172	-				-0.5
89,172	-				+0.1
89,172	-				-0.7
89,172	-				+0.1
89,172	-				+2.3
89,172	-				-0.4
89,172	-				-0.7
89,172	-				+0.9
89,172	-				+0.2
89,172	-				+0.3
89,172	-				+0.3
89,172	-				+0.7
89,172	-				+1.1
89,172	-				-0.5
89,172	-				-1.2
89,172	-				-0.4
89,172	-				+0.2
89,172	-				-0.6
89,267	+				-1.0
89,267	+				+0.5
89,267	+				-0.1
89,267	+				-0.4
89,267	+				-0.5
89,267	+				-0.4
89,267	+				+0.3
89,267	+				-0.2
89,267	+				-1.2
89,267	+				+0.5
89,267	+				-2.0
89,267	+				-1.4
89,267	+				+0.2
89,267	+				+0.1
89,267	+				-1.5
89,267	+				-0.1
89,267	+				-0.9
89,268	-				-0.4
89,268	-				+0.8
89,268	-				+0.6
89,268	-				+0.7
89,268	-				-1.2
89,268	-				-1.1
89,268	-				+0.8
89,268	-				-0.2
89,268	-				-0.2
89,268	-				-0.6
89,268	-				-1.4
89,268	-				+0.0
89,268	-				-0.4
89,268	-				+0.7
89,268	-				+1.0
89,268	-				+0.2
89,268	-				-0.8
89,268	-				-0.8
89,268	-				+0.7
89,268	-				-0.5
89,268	-				+0.3
89,282	-				+0.4
89,282	-				+0.3
89,282	-				-0.3