Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08205 and HSERO_RS08210 are separated by 30 nucleotides HSERO_RS08210 and HSERO_RS08215 are separated by 63 nucleotides HSERO_RS08215 and HSERO_RS08220 are separated by 61 nucleotides HSERO_RS08220 and HSERO_RS08225 are separated by 39 nucleotides
HSERO_RS08205: HSERO_RS08205 - sulfonate ABC transporter, at 1,872,650 to 1,873,489
_RS08205
HSERO_RS08210: HSERO_RS08210 - aliphatic sulfonate ABC transporter ATP-binding protein, at 1,873,520 to 1,874,353
_RS08210
HSERO_RS08215: HSERO_RS08215 - transporter, at 1,874,417 to 1,874,632
_RS08215
HSERO_RS08220: HSERO_RS08220 - diguanylate phosphodiesterase, at 1,874,694 to 1,875,521
_RS08220
HSERO_RS08225: HSERO_RS08225 - alpha/beta hydrolase, at 1,875,561 to 1,876,139
_RS08225
Position (kb) 1874
1875 Strain fitness (log2 ratio) -1
0
1 at 1873.597 kb on + strand at 1873.623 kb on - strand, within HSERO_RS08210 at 1873.760 kb on - strand, within HSERO_RS08210 at 1873.829 kb on + strand, within HSERO_RS08210 at 1873.844 kb on + strand, within HSERO_RS08210 at 1873.847 kb on - strand, within HSERO_RS08210 at 1873.934 kb on - strand, within HSERO_RS08210 at 1874.109 kb on + strand, within HSERO_RS08210 at 1874.192 kb on + strand, within HSERO_RS08210 at 1874.200 kb on - strand, within HSERO_RS08210 at 1874.236 kb on + strand, within HSERO_RS08210 at 1874.357 kb on + strand at 1874.413 kb on + strand at 1874.457 kb on - strand, within HSERO_RS08215 at 1874.461 kb on + strand, within HSERO_RS08215 at 1874.504 kb on + strand, within HSERO_RS08215 at 1874.604 kb on - strand, within HSERO_RS08215 at 1874.714 kb on + strand at 1874.839 kb on + strand, within HSERO_RS08220 at 1875.038 kb on + strand, within HSERO_RS08220 at 1875.090 kb on - strand, within HSERO_RS08220 at 1875.189 kb on - strand, within HSERO_RS08220 at 1875.269 kb on + strand, within HSERO_RS08220 at 1875.297 kb on - strand, within HSERO_RS08220 at 1875.549 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,873,597 + +0.8 1,873,623 - HSERO_RS08210 0.12 -0.1 1,873,760 - HSERO_RS08210 0.29 +0.3 1,873,829 + HSERO_RS08210 0.37 -0.7 1,873,844 + HSERO_RS08210 0.39 +0.3 1,873,847 - HSERO_RS08210 0.39 +0.5 1,873,934 - HSERO_RS08210 0.50 -0.7 1,874,109 + HSERO_RS08210 0.71 -0.8 1,874,192 + HSERO_RS08210 0.81 -0.3 1,874,200 - HSERO_RS08210 0.82 -0.1 1,874,236 + HSERO_RS08210 0.86 -0.5 1,874,357 + +1.2 1,874,413 + -0.9 1,874,457 - HSERO_RS08215 0.19 +1.3 1,874,461 + HSERO_RS08215 0.20 +1.3 1,874,504 + HSERO_RS08215 0.40 -0.3 1,874,604 - HSERO_RS08215 0.87 +0.5 1,874,714 + +0.8 1,874,839 + HSERO_RS08220 0.18 -0.1 1,875,038 + HSERO_RS08220 0.42 +0.1 1,875,090 - HSERO_RS08220 0.48 -0.4 1,875,189 - HSERO_RS08220 0.60 -0.3 1,875,269 + HSERO_RS08220 0.69 +0.2 1,875,297 - HSERO_RS08220 0.73 -0.4 1,875,549 + +1.0
Or see this region's nucleotide sequence