Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05000

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
1,100,520	-				-0.5
1,100,590	-				+0.5
1,100,623	-				+0.1
1,100,634	+				+0.3
1,100,634	+				-0.3
1,100,644	+				+0.2
1,100,654	-				+1.1
1,100,684	+				-0.6
1,100,691	-				+0.0
1,100,692	-				-1.0
1,100,699	+				-1.0
1,100,699	+				+0.7
1,100,699	+				-0.2
1,100,707	-				+0.9
1,100,735	+				+1.2
1,100,735	+				-0.4
1,100,743	-				-0.1
1,100,743	-				-2.7
1,100,745	+				+0.2
1,100,747	+				+0.5
1,100,753	-				+0.2
1,100,754	+				+0.1
1,100,754	+				+0.7
1,100,754	+				+0.1
1,100,762	-				-0.4
1,100,764	+				-0.4
1,100,772	-				+0.5
1,100,784	-				+0.7
1,100,788	+				-1.0
1,100,810	+				-0.5
1,100,811	+				+0.1
1,100,811	+				+0.1
1,100,811	+				+0.4
1,100,811	+				+2.8
1,100,811	+				+0.2
1,100,816	+				-0.1
1,100,816	+				-0.3
1,100,818	+				+0.3
1,100,824	-				-0.3
1,100,826	-				+2.5
1,100,826	-				+0.5
1,100,835	+				-0.0
1,100,835	+				-0.5
1,100,835	+				-0.1
1,100,843	-				-0.4
1,100,846	+				+0.4
1,100,846	+				+0.9
1,100,856	+				+1.0
1,100,863	+				+0.3
1,100,866	-				+0.6
1,100,866	-				-1.1
1,100,870	+				-0.9
1,100,871	-				-0.9
1,100,871	-				-0.1
1,100,871	-				-0.6
1,100,872	-				-1.9
1,100,879	-				-0.9
1,100,879	-				-0.4
1,100,881	-				+0.3
1,100,885	+				-0.9
1,100,885	+				+0.2
1,100,921	+				-0.9
1,100,921	+				-0.8
1,100,924	+				+0.4
1,100,924	+				-0.3
1,100,924	+				-0.5
1,100,924	+				-0.5
1,100,926	+				+0.1
1,100,926	+				-0.2
1,100,926	+				-0.8
1,100,926	+				-1.0
1,100,926	+				+0.4
1,100,926	+				-1.9
1,100,926	+				+0.2
1,100,926	+				+2.0
1,100,926	+				-0.4
1,100,929	-				-0.2
1,100,929	-				+0.6
1,100,929	-				-0.6
1,100,929	-				+0.3
1,100,932	-				-1.1
1,100,932	-				-1.1
1,100,934	-				-0.4
1,100,934	-				+0.5
1,100,934	-				+0.7
1,100,934	-				-0.5
1,100,934	-				-0.0
1,100,934	-				+0.2
1,100,934	-				+0.6
1,100,935	+				-0.5
1,100,940	+				+1.0
1,100,942	+				+2.1
1,100,942	+				+0.5
1,100,943	+				-0.3
1,100,943	+				+0.5
1,100,943	+				-0.2
1,100,943	+				+1.4
1,100,943	-				-0.5
1,100,943	-				+0.7
1,100,943	-				+0.5
1,100,947	-				-0.7
1,100,951	-				-0.3
1,100,951	-				+0.1
1,100,951	-				+0.9
1,100,961	+				+0.3
1,100,963	+				+0.2
1,100,963	+				-0.6
1,100,963	+				-0.2
1,100,969	-				+0.4
1,100,969	-				-0.5
1,100,969	-				+0.0
1,100,969	-				+0.1
1,100,971	+				-0.4
1,100,971	-				-0.3
1,100,971	-				-0.3
1,100,971	-				+1.1
1,100,971	-				-0.2
1,100,971	-				+0.3
1,100,973	+				-0.2
1,100,978	+				-0.1
1,100,979	-				-0.3
1,100,980	-				+0.3
1,100,981	-				+0.2
1,100,981	-				+1.7
1,100,997	+				-0.4
1,100,998	+				-1.3
1,100,999	+				-0.4
1,100,999	+				-0.1
1,100,999	+				+0.1
1,101,005	-				+0.1
1,101,005	-				-1.2
1,101,007	-				-0.5
1,101,031	-				+0.0
1,101,042	+				+0.1
1,101,045	+				-0.4
1,101,045	+				-2.5
1,101,048	-				+0.1
1,101,048	-				+0.1
1,101,051	-				-0.0
1,101,061	+				+0.5
1,101,099	+				-0.4
1,101,099	+				+1.2
1,101,104	+				+1.2
1,101,116	+				-0.8
1,101,116	+				-0.8
1,101,118	-				-0.3
1,101,123	-				-0.1
1,101,130	+				-0.4
1,101,146	-				+1.5
1,101,154	+				+0.6
1,101,154	+				-0.4
1,101,164	+				+1.0
1,101,188	-				-0.3
1,101,219	+				+0.5
1,101,226	+				+0.1
1,101,226	+				-0.2
1,101,230	+				+0.5
1,101,238	-				+0.1
1,101,239	-				-1.2
1,101,239	-				-0.2
1,101,242	+				+0.1
1,101,242	+				+2.1
1,101,244	+				+0.3
1,101,244	+				-0.6
1,101,244	+				+0.3
1,101,244	+				-0.5
1,101,244	+				-0.1
1,101,244	+				-3.2
1,101,244	+				+0.1
1,101,244	+				+0.2
1,101,244	+				-0.1
1,101,244	+				-0.3
1,101,244	+				-0.8
1,101,244	+				-0.9
1,101,244	+				-0.1
1,101,244	+				+0.3
1,101,244	+				-0.7
1,101,244	+				-0.6
1,101,244	+				-0.1
1,101,244	+				+1.1
1,101,244	+				+0.5
1,101,244	+				-0.8
1,101,244	+				-0.0
1,101,244	+				-1.4
1,101,244	+				-0.0
1,101,244	+				-0.3
1,101,244	+				-0.3
1,101,244	+				-0.0
1,101,244	+				+0.1
1,101,244	+				-0.3
1,101,244	+				+0.3
1,101,249	+				+0.6
1,101,252	-				-0.0
1,101,252	-				-0.1
1,101,252	-				-0.4
1,101,252	-				+1.1
1,101,252	-				-0.2
1,101,252	-				-0.4
1,101,252	-				-0.0
1,101,252	-				-0.0
1,101,252	-				+0.2
1,101,252	-				+0.8
1,101,252	-				-0.3
1,101,252	-				+0.2
1,101,252	-				+0.3
1,101,252	-				-1.3
1,101,252	-				-1.9
1,101,252	-				+0.7
1,101,252	-				-0.0
1,101,252	-				-0.4
1,101,252	-				-0.8
1,101,252	-				+0.1
1,101,252	-				+0.5
1,101,252	-				+0.2
1,101,252	-				-0.1
1,101,252	-				+0.1
1,101,252	-				-1.7
1,101,253	-				+0.5
1,101,253	-				-1.3
1,101,301	+				-0.7
1,101,301	+				+0.0
1,101,309	-				+1.1
1,101,309	-				-0.3
1,101,309	-				+0.5
1,101,318	-				-0.4
1,101,334	-				-0.8
1,101,340	+				+0.3
1,101,340	+				-0.6
1,101,347	+				+0.1
1,101,347	+				-0.1
1,101,350	-				-0.3
1,101,355	-				+0.6
1,101,355	-				+0.5
1,101,355	-				+4.3
1,101,376	-				-0.9
1,101,404	-				-0.6
1,101,426	-				+0.8
1,101,467	-		HSERO_RS05000	0.14	+0.2
1,101,484	-		HSERO_RS05000	0.17	-1.1
1,101,484	-		HSERO_RS05000	0.17	+0.5
1,101,504	-		HSERO_RS05000	0.19	+0.1
1,101,545	+		HSERO_RS05000	0.24	+1.1
1,101,563	-		HSERO_RS05000	0.27	+1.4
1,101,572	-		HSERO_RS05000	0.28	-0.5
1,101,582	-		HSERO_RS05000	0.29	-0.1
1,101,621	+		HSERO_RS05000	0.34	+0.1
1,101,667	-		HSERO_RS05000	0.40	-0.3
1,101,678	+		HSERO_RS05000	0.41	+0.7
1,101,679	-		HSERO_RS05000	0.41	-0.4
1,101,747	-		HSERO_RS05000	0.50	+3.3
1,101,971	+		HSERO_RS05000	0.78	+1.1
1,101,979	-		HSERO_RS05000	0.79	+0.7
1,102,017	+		HSERO_RS05000	0.84	-0.9
1,102,049	-		HSERO_RS05000	0.88	+0.1
1,102,049	-		HSERO_RS05000	0.88	-0.2
1,102,080	+				+0.4
1,102,099	+				+0.9
1,102,122	+				+0.2
1,102,122	+				+0.5
1,102,148	+				-1.9
1,102,264	-				+0.1
1,102,276	+				+0.4
1,102,276	+				+1.5
1,102,285	+				+0.6
1,102,302	+		HSERO_RS05005	0.10	-0.9
1,102,400	-		HSERO_RS05005	0.20	-0.3
1,102,447	-		HSERO_RS05005	0.25	-1.0
1,102,503	+		HSERO_RS05005	0.31	-0.0
1,102,526	+		HSERO_RS05005	0.33	-0.6
1,102,533	+		HSERO_RS05005	0.34	-0.8
1,102,613	+		HSERO_RS05005	0.42	+0.4
1,102,700	+				-0.5
1,102,744	-		HSERO_RS05005	0.55	-0.1
1,102,784	+		HSERO_RS05005	0.59	-0.8
1,102,797	-		HSERO_RS05005	0.61	-0.1
1,102,900	-		HSERO_RS05005	0.71	-0.2
1,102,900	-		HSERO_RS05005	0.71	-0.5
1,102,982	-		HSERO_RS05005	0.80	-0.7
1,103,022	+		HSERO_RS05005	0.84	+0.2
1,103,067	-		HSERO_RS05005	0.88	-0.0
1,103,074	+		HSERO_RS05005	0.89	-1.1