Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03665 and HSERO_RS03670 are separated by 355 nucleotides HSERO_RS03670 and HSERO_RS03675 are separated by 98 nucleotides
HSERO_RS03665: HSERO_RS03665 - oxidoreductase, at 800,673 to 802,172
_RS03665
HSERO_RS03670: HSERO_RS03670 - hypothetical protein, at 802,528 to 802,962
_RS03670
HSERO_RS03675: HSERO_RS03675 - type VI secretion protein, at 803,061 to 805,925
_RS03675
Position (kb) 802
803 Strain fitness (log2 ratio) -2
-1
0
1 at 801.562 kb on + strand, within HSERO_RS03665 at 801.587 kb on + strand, within HSERO_RS03665 at 801.723 kb on - strand, within HSERO_RS03665 at 801.781 kb on - strand, within HSERO_RS03665 at 801.786 kb on - strand, within HSERO_RS03665 at 801.843 kb on + strand, within HSERO_RS03665 at 801.861 kb on - strand, within HSERO_RS03665 at 801.991 kb on + strand, within HSERO_RS03665 at 802.326 kb on + strand at 802.334 kb on - strand at 802.335 kb on - strand at 802.375 kb on - strand at 802.389 kb on + strand at 802.389 kb on + strand at 802.443 kb on + strand at 802.559 kb on + strand at 802.560 kb on + strand at 802.835 kb on + strand, within HSERO_RS03670 at 802.838 kb on - strand, within HSERO_RS03670 at 802.838 kb on - strand, within HSERO_RS03670 at 802.848 kb on + strand, within HSERO_RS03670 at 802.861 kb on - strand, within HSERO_RS03670 at 803.015 kb on - strand at 803.080 kb on + strand at 803.080 kb on + strand at 803.080 kb on + strand at 803.397 kb on - strand, within HSERO_RS03675 at 803.397 kb on - strand, within HSERO_RS03675 at 803.426 kb on - strand, within HSERO_RS03675 at 803.878 kb on + strand at 803.878 kb on + strand, within HSERO_RS03675 at 803.941 kb on + strand, within HSERO_RS03675 at 803.949 kb on - strand, within HSERO_RS03675 at 803.949 kb on - strand, within HSERO_RS03675 at 803.949 kb on - strand, within HSERO_RS03675 at 803.949 kb on - strand, within HSERO_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 801,562 + HSERO_RS03665 0.59 -0.2 801,587 + HSERO_RS03665 0.61 +0.3 801,723 - HSERO_RS03665 0.70 +0.1 801,781 - HSERO_RS03665 0.74 +0.1 801,786 - HSERO_RS03665 0.74 +1.5 801,843 + HSERO_RS03665 0.78 -0.1 801,861 - HSERO_RS03665 0.79 +0.1 801,991 + HSERO_RS03665 0.88 -0.9 802,326 + +0.7 802,334 - -0.3 802,335 - -0.3 802,375 - -1.0 802,389 + +0.2 802,389 + +0.1 802,443 + +0.3 802,559 + -0.3 802,560 + +0.3 802,835 + HSERO_RS03670 0.71 -1.6 802,838 - HSERO_RS03670 0.71 -1.1 802,838 - HSERO_RS03670 0.71 -1.8 802,848 + HSERO_RS03670 0.74 -0.5 802,861 - HSERO_RS03670 0.77 -0.7 803,015 - -2.0 803,080 + +0.1 803,080 + +0.0 803,080 + -0.1 803,397 - HSERO_RS03675 0.12 -0.3 803,397 - HSERO_RS03675 0.12 -1.7 803,426 - HSERO_RS03675 0.13 -0.3 803,878 + -0.5 803,878 + HSERO_RS03675 0.29 -0.2 803,941 + HSERO_RS03675 0.31 -0.0 803,949 - HSERO_RS03675 0.31 -0.4 803,949 - HSERO_RS03675 0.31 -0.4 803,949 - HSERO_RS03675 0.31 -0.6 803,949 - HSERO_RS03675 0.31 -0.9
Or see this region's nucleotide sequence