Experiment: beta-Cyclodextrin 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03465 and HMPREF1058_RS03460 are separated by 19 nucleotides HMPREF1058_RS03460 and HMPREF1058_RS03455 are separated by 21 nucleotides HMPREF1058_RS03455 and HMPREF1058_RS03450 are separated by 39 nucleotides HMPREF1058_RS03450 and HMPREF1058_RS03445 are separated by 128 nucleotides
HMPREF1058_RS03465: HMPREF1058_RS03465 - polysaccharide pyruvyl transferase family protein, at 275,258 to 276,364
_RS03465
HMPREF1058_RS03460: HMPREF1058_RS03460 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 276,384 to 277,574
_RS03460
HMPREF1058_RS03455: HMPREF1058_RS03455 - hypothetical protein, at 277,596 to 277,811
_RS03455
HMPREF1058_RS03450: HMPREF1058_RS03450 - hypothetical protein, at 277,851 to 278,297
_RS03450
HMPREF1058_RS03445: HMPREF1058_RS03445 - hypothetical protein, at 278,426 to 280,690
_RS03445
Position (kb) 276
277
278 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 275.419 kb on + strand, within HMPREF1058_RS03465 at 275.523 kb on + strand, within HMPREF1058_RS03465 at 275.622 kb on - strand, within HMPREF1058_RS03465 at 275.622 kb on - strand, within HMPREF1058_RS03465 at 275.683 kb on + strand, within HMPREF1058_RS03465 at 275.706 kb on + strand, within HMPREF1058_RS03465 at 275.733 kb on + strand, within HMPREF1058_RS03465 at 275.762 kb on + strand, within HMPREF1058_RS03465 at 275.767 kb on + strand, within HMPREF1058_RS03465 at 275.810 kb on + strand, within HMPREF1058_RS03465 at 275.853 kb on + strand, within HMPREF1058_RS03465 at 275.935 kb on + strand, within HMPREF1058_RS03465 at 275.942 kb on - strand, within HMPREF1058_RS03465 at 276.026 kb on - strand, within HMPREF1058_RS03465 at 276.086 kb on + strand, within HMPREF1058_RS03465 at 276.087 kb on - strand, within HMPREF1058_RS03465 at 276.091 kb on - strand, within HMPREF1058_RS03465 at 276.116 kb on + strand, within HMPREF1058_RS03465 at 276.156 kb on + strand, within HMPREF1058_RS03465 at 276.157 kb on - strand, within HMPREF1058_RS03465 at 276.163 kb on + strand, within HMPREF1058_RS03465 at 276.164 kb on - strand, within HMPREF1058_RS03465 at 276.337 kb on + strand at 276.391 kb on - strand at 276.393 kb on + strand at 276.406 kb on - strand at 276.520 kb on + strand, within HMPREF1058_RS03460 at 276.530 kb on + strand, within HMPREF1058_RS03460 at 276.531 kb on - strand, within HMPREF1058_RS03460 at 276.531 kb on - strand, within HMPREF1058_RS03460 at 276.933 kb on - strand, within HMPREF1058_RS03460 at 276.983 kb on + strand, within HMPREF1058_RS03460 at 276.992 kb on + strand, within HMPREF1058_RS03460 at 277.177 kb on + strand, within HMPREF1058_RS03460 at 277.211 kb on + strand, within HMPREF1058_RS03460 at 277.211 kb on + strand, within HMPREF1058_RS03460 at 277.225 kb on + strand, within HMPREF1058_RS03460 at 277.278 kb on + strand, within HMPREF1058_RS03460 at 277.336 kb on + strand, within HMPREF1058_RS03460 at 277.379 kb on - strand, within HMPREF1058_RS03460 at 277.447 kb on - strand, within HMPREF1058_RS03460 at 277.588 kb on - strand at 277.588 kb on - strand at 277.589 kb on + strand at 277.589 kb on + strand at 277.589 kb on + strand at 277.597 kb on + strand at 277.664 kb on - strand, within HMPREF1058_RS03455 at 277.664 kb on - strand, within HMPREF1058_RS03455 at 277.682 kb on + strand, within HMPREF1058_RS03455 at 277.682 kb on + strand, within HMPREF1058_RS03455 at 277.868 kb on + strand at 277.872 kb on + strand at 277.886 kb on + strand at 277.958 kb on + strand, within HMPREF1058_RS03450 at 277.959 kb on - strand, within HMPREF1058_RS03450 at 277.985 kb on + strand, within HMPREF1058_RS03450 at 277.992 kb on - strand, within HMPREF1058_RS03450 at 278.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 5 mg/ml (C) remove 275,419 + HMPREF1058_RS03465 0.15 -0.0 275,523 + HMPREF1058_RS03465 0.24 -1.2 275,622 - HMPREF1058_RS03465 0.33 -0.8 275,622 - HMPREF1058_RS03465 0.33 -1.9 275,683 + HMPREF1058_RS03465 0.38 +0.4 275,706 + HMPREF1058_RS03465 0.40 -0.8 275,733 + HMPREF1058_RS03465 0.43 +0.6 275,762 + HMPREF1058_RS03465 0.46 +0.9 275,767 + HMPREF1058_RS03465 0.46 +0.4 275,810 + HMPREF1058_RS03465 0.50 -1.3 275,853 + HMPREF1058_RS03465 0.54 -2.7 275,935 + HMPREF1058_RS03465 0.61 -0.9 275,942 - HMPREF1058_RS03465 0.62 -0.2 276,026 - HMPREF1058_RS03465 0.69 -0.6 276,086 + HMPREF1058_RS03465 0.75 +0.2 276,087 - HMPREF1058_RS03465 0.75 -1.0 276,091 - HMPREF1058_RS03465 0.75 -2.6 276,116 + HMPREF1058_RS03465 0.78 -2.0 276,156 + HMPREF1058_RS03465 0.81 -1.2 276,157 - HMPREF1058_RS03465 0.81 -1.0 276,163 + HMPREF1058_RS03465 0.82 -2.1 276,164 - HMPREF1058_RS03465 0.82 +1.7 276,337 + -1.0 276,391 - -0.2 276,393 + +1.7 276,406 - +0.8 276,520 + HMPREF1058_RS03460 0.11 +0.8 276,530 + HMPREF1058_RS03460 0.12 +0.4 276,531 - HMPREF1058_RS03460 0.12 +1.8 276,531 - HMPREF1058_RS03460 0.12 +0.8 276,933 - HMPREF1058_RS03460 0.46 -0.7 276,983 + HMPREF1058_RS03460 0.50 +1.0 276,992 + HMPREF1058_RS03460 0.51 +0.1 277,177 + HMPREF1058_RS03460 0.67 +0.4 277,211 + HMPREF1058_RS03460 0.69 +0.8 277,211 + HMPREF1058_RS03460 0.69 +4.0 277,225 + HMPREF1058_RS03460 0.71 +0.3 277,278 + HMPREF1058_RS03460 0.75 -2.0 277,336 + HMPREF1058_RS03460 0.80 -1.9 277,379 - HMPREF1058_RS03460 0.84 +0.8 277,447 - HMPREF1058_RS03460 0.89 -0.0 277,588 - -1.9 277,588 - +0.9 277,589 + +0.6 277,589 + -1.8 277,589 + +0.6 277,597 + -1.6 277,664 - HMPREF1058_RS03455 0.31 +1.3 277,664 - HMPREF1058_RS03455 0.31 +0.4 277,682 + HMPREF1058_RS03455 0.40 -0.4 277,682 + HMPREF1058_RS03455 0.40 +4.5 277,868 + +0.7 277,872 + -1.6 277,886 + +1.6 277,958 + HMPREF1058_RS03450 0.24 -0.6 277,959 - HMPREF1058_RS03450 0.24 -0.5 277,985 + HMPREF1058_RS03450 0.30 +0.0 277,992 - HMPREF1058_RS03450 0.32 +0.6 278,359 - -2.2
Or see this region's nucleotide sequence