Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02061 and CCNA_02062 are separated by 110 nucleotides CCNA_02062 and CCNA_02063 are separated by 82 nucleotides
CCNA_02061: CCNA_02061 - hypothetical protein, at 2,210,438 to 2,211,667
_02061
CCNA_02062: CCNA_02062 - DNA repair protein recN, at 2,211,778 to 2,213,484
_02062
CCNA_02063: CCNA_02063 - beta-barrel assembly machine (BAM) protein BamD, at 2,213,567 to 2,214,496
_02063
Position (kb)
2211
2212
2213
2214 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2210.839 kb on + strand, within CCNA_02061 at 2210.847 kb on - strand, within CCNA_02061 at 2210.847 kb on - strand, within CCNA_02061 at 2210.900 kb on - strand, within CCNA_02061 at 2210.909 kb on - strand, within CCNA_02061 at 2210.973 kb on + strand, within CCNA_02061 at 2210.978 kb on + strand, within CCNA_02061 at 2211.058 kb on - strand, within CCNA_02061 at 2211.065 kb on + strand, within CCNA_02061 at 2211.103 kb on + strand, within CCNA_02061 at 2211.130 kb on - strand, within CCNA_02061 at 2211.146 kb on + strand, within CCNA_02061 at 2211.148 kb on + strand, within CCNA_02061 at 2211.154 kb on - strand, within CCNA_02061 at 2211.154 kb on - strand, within CCNA_02061 at 2211.164 kb on - strand, within CCNA_02061 at 2211.177 kb on + strand, within CCNA_02061 at 2211.254 kb on - strand, within CCNA_02061 at 2211.267 kb on - strand, within CCNA_02061 at 2211.306 kb on + strand, within CCNA_02061 at 2211.316 kb on + strand, within CCNA_02061 at 2211.352 kb on + strand, within CCNA_02061 at 2211.352 kb on + strand, within CCNA_02061 at 2211.471 kb on + strand, within CCNA_02061 at 2211.471 kb on + strand, within CCNA_02061 at 2211.479 kb on - strand, within CCNA_02061 at 2211.489 kb on - strand, within CCNA_02061 at 2211.560 kb on + strand at 2211.578 kb on - strand at 2211.578 kb on - strand at 2211.581 kb on - strand at 2211.593 kb on + strand at 2211.616 kb on - strand at 2211.616 kb on - strand at 2211.616 kb on - strand at 2211.630 kb on + strand at 2211.633 kb on - strand at 2211.644 kb on - strand at 2211.644 kb on - strand at 2211.655 kb on + strand at 2211.662 kb on + strand at 2211.670 kb on - strand at 2211.678 kb on - strand at 2211.685 kb on - strand at 2211.824 kb on + strand at 2211.873 kb on + strand at 2211.881 kb on - strand at 2211.896 kb on - strand at 2211.902 kb on - strand at 2211.912 kb on - strand at 2212.067 kb on - strand, within CCNA_02062 at 2212.086 kb on + strand, within CCNA_02062 at 2212.086 kb on + strand, within CCNA_02062 at 2212.198 kb on - strand, within CCNA_02062 at 2212.230 kb on - strand, within CCNA_02062 at 2212.241 kb on + strand, within CCNA_02062 at 2212.252 kb on + strand, within CCNA_02062 at 2212.258 kb on + strand, within CCNA_02062 at 2212.260 kb on + strand, within CCNA_02062 at 2212.335 kb on - strand, within CCNA_02062 at 2212.359 kb on - strand, within CCNA_02062 at 2212.374 kb on - strand, within CCNA_02062 at 2212.381 kb on + strand, within CCNA_02062 at 2212.389 kb on - strand, within CCNA_02062 at 2212.449 kb on - strand, within CCNA_02062 at 2212.479 kb on - strand, within CCNA_02062 at 2212.531 kb on - strand, within CCNA_02062 at 2212.531 kb on - strand, within CCNA_02062 at 2212.561 kb on - strand, within CCNA_02062 at 2212.593 kb on - strand, within CCNA_02062 at 2212.680 kb on - strand, within CCNA_02062 at 2212.780 kb on - strand, within CCNA_02062 at 2212.786 kb on + strand, within CCNA_02062 at 2212.794 kb on - strand, within CCNA_02062 at 2212.794 kb on - strand, within CCNA_02062 at 2212.816 kb on - strand, within CCNA_02062 at 2212.839 kb on - strand, within CCNA_02062 at 2212.851 kb on - strand, within CCNA_02062 at 2212.868 kb on - strand, within CCNA_02062 at 2212.878 kb on + strand, within CCNA_02062 at 2212.878 kb on + strand, within CCNA_02062 at 2212.886 kb on - strand, within CCNA_02062 at 2212.886 kb on - strand, within CCNA_02062 at 2212.959 kb on + strand, within CCNA_02062 at 2212.967 kb on - strand, within CCNA_02062 at 2212.977 kb on - strand, within CCNA_02062 at 2213.062 kb on - strand, within CCNA_02062 at 2213.062 kb on - strand, within CCNA_02062 at 2213.078 kb on + strand, within CCNA_02062 at 2213.078 kb on + strand, within CCNA_02062 at 2213.078 kb on - strand, within CCNA_02062 at 2213.229 kb on + strand, within CCNA_02062 at 2213.304 kb on - strand, within CCNA_02062 at 2213.304 kb on - strand, within CCNA_02062 at 2213.494 kb on - strand at 2213.521 kb on + strand at 2213.567 kb on + strand at 2213.588 kb on - strand at 2213.594 kb on + strand at 2213.662 kb on - strand, within CCNA_02063 at 2213.672 kb on - strand, within CCNA_02063 at 2213.679 kb on - strand, within CCNA_02063 at 2213.690 kb on - strand, within CCNA_02063 at 2213.690 kb on - strand, within CCNA_02063 at 2213.771 kb on + strand, within CCNA_02063
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 2,210,839 + CCNA_02061 0.33 +0.6 2,210,847 - CCNA_02061 0.33 -1.5 2,210,847 - CCNA_02061 0.33 -0.5 2,210,900 - CCNA_02061 0.38 +0.6 2,210,909 - CCNA_02061 0.38 -0.1 2,210,973 + CCNA_02061 0.43 -0.6 2,210,978 + CCNA_02061 0.44 -0.1 2,211,058 - CCNA_02061 0.50 -1.3 2,211,065 + CCNA_02061 0.51 +0.1 2,211,103 + CCNA_02061 0.54 -0.1 2,211,130 - CCNA_02061 0.56 +2.1 2,211,146 + CCNA_02061 0.58 +3.5 2,211,148 + CCNA_02061 0.58 +1.1 2,211,154 - CCNA_02061 0.58 +1.1 2,211,154 - CCNA_02061 0.58 +0.4 2,211,164 - CCNA_02061 0.59 -2.5 2,211,177 + CCNA_02061 0.60 +0.1 2,211,254 - CCNA_02061 0.66 +1.4 2,211,267 - CCNA_02061 0.67 -0.4 2,211,306 + CCNA_02061 0.71 +0.6 2,211,316 + CCNA_02061 0.71 -1.0 2,211,352 + CCNA_02061 0.74 +1.3 2,211,352 + CCNA_02061 0.74 +0.8 2,211,471 + CCNA_02061 0.84 +0.8 2,211,471 + CCNA_02061 0.84 +1.1 2,211,479 - CCNA_02061 0.85 -0.5 2,211,489 - CCNA_02061 0.85 +1.2 2,211,560 + +0.6 2,211,578 - -1.2 2,211,578 - -1.0 2,211,581 - -1.4 2,211,593 + -0.0 2,211,616 - -0.1 2,211,616 - -0.6 2,211,616 - +0.4 2,211,630 + +1.8 2,211,633 - -0.9 2,211,644 - +0.9 2,211,644 - +0.6 2,211,655 + -0.6 2,211,662 + +0.5 2,211,670 - +0.3 2,211,678 - +2.3 2,211,685 - +2.2 2,211,824 + -1.0 2,211,873 + -0.1 2,211,881 - +1.3 2,211,896 - +0.2 2,211,902 - +3.1 2,211,912 - +1.6 2,212,067 - CCNA_02062 0.17 +1.5 2,212,086 + CCNA_02062 0.18 -1.9 2,212,086 + CCNA_02062 0.18 -0.8 2,212,198 - CCNA_02062 0.25 +1.1 2,212,230 - CCNA_02062 0.26 +1.8 2,212,241 + CCNA_02062 0.27 -0.7 2,212,252 + CCNA_02062 0.28 -1.2 2,212,258 + CCNA_02062 0.28 -2.9 2,212,260 + CCNA_02062 0.28 -0.1 2,212,335 - CCNA_02062 0.33 +1.1 2,212,359 - CCNA_02062 0.34 +1.9 2,212,374 - CCNA_02062 0.35 +0.2 2,212,381 + CCNA_02062 0.35 -0.6 2,212,389 - CCNA_02062 0.36 +0.7 2,212,449 - CCNA_02062 0.39 +1.7 2,212,479 - CCNA_02062 0.41 +1.1 2,212,531 - CCNA_02062 0.44 +1.6 2,212,531 - CCNA_02062 0.44 +0.8 2,212,561 - CCNA_02062 0.46 +0.7 2,212,593 - CCNA_02062 0.48 +0.1 2,212,680 - CCNA_02062 0.53 +1.3 2,212,780 - CCNA_02062 0.59 +0.7 2,212,786 + CCNA_02062 0.59 -0.7 2,212,794 - CCNA_02062 0.60 +1.4 2,212,794 - CCNA_02062 0.60 +1.6 2,212,816 - CCNA_02062 0.61 +0.8 2,212,839 - CCNA_02062 0.62 +1.0 2,212,851 - CCNA_02062 0.63 +2.3 2,212,868 - CCNA_02062 0.64 +0.8 2,212,878 + CCNA_02062 0.64 -0.0 2,212,878 + CCNA_02062 0.64 +0.3 2,212,886 - CCNA_02062 0.65 +1.6 2,212,886 - CCNA_02062 0.65 +1.0 2,212,959 + CCNA_02062 0.69 -1.0 2,212,967 - CCNA_02062 0.70 +2.6 2,212,977 - CCNA_02062 0.70 -1.2 2,213,062 - CCNA_02062 0.75 +1.9 2,213,062 - CCNA_02062 0.75 +1.9 2,213,078 + CCNA_02062 0.76 -1.3 2,213,078 + CCNA_02062 0.76 -0.4 2,213,078 - CCNA_02062 0.76 +0.5 2,213,229 + CCNA_02062 0.85 -1.6 2,213,304 - CCNA_02062 0.89 +1.1 2,213,304 - CCNA_02062 0.89 +0.2 2,213,494 - +2.7 2,213,521 + -1.4 2,213,567 + -0.1 2,213,588 - +2.9 2,213,594 + +0.5 2,213,662 - CCNA_02063 0.10 +2.5 2,213,672 - CCNA_02063 0.11 +1.2 2,213,679 - CCNA_02063 0.12 +2.0 2,213,690 - CCNA_02063 0.13 +1.8 2,213,690 - CCNA_02063 0.13 +0.9 2,213,771 + CCNA_02063 0.22 +0.3
Or see this region's nucleotide sequence