Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01792

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01791 and CCNA_01792 are separated by 114 nucleotidesCCNA_01792 and CCNA_01793 are separated by 123 nucleotides CCNA_01791: CCNA_01791 - CTP synthase, at 1,917,887 to 1,919,539 _01791 CCNA_01792: CCNA_01792 - LSU ribosomal protein L32P, at 1,919,654 to 1,919,836 _01792 CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958 _01793 Position (kb) 1919 1920Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1919.998 kb on + strandat 1920.019 kb on + strandat 1920.027 kb on - strandat 1920.028 kb on - strandat 1920.045 kb on - strandat 1920.104 kb on - strand, within CCNA_01793at 1920.138 kb on - strand, within CCNA_01793at 1920.199 kb on - strand, within CCNA_01793at 1920.220 kb on + strand, within CCNA_01793at 1920.225 kb on + strand, within CCNA_01793at 1920.244 kb on + strand, within CCNA_01793at 1920.349 kb on + strand, within CCNA_01793at 1920.352 kb on - strand, within CCNA_01793at 1920.425 kb on - strand, within CCNA_01793at 1920.467 kb on - strand, within CCNA_01793at 1920.486 kb on + strand, within CCNA_01793at 1920.494 kb on - strand, within CCNA_01793at 1920.552 kb on + strand, within CCNA_01793at 1920.552 kb on + strand, within CCNA_01793at 1920.560 kb on - strand, within CCNA_01793at 1920.583 kb on + strand, within CCNA_01793at 1920.631 kb on + strand, within CCNA_01793at 1920.645 kb on - strand, within CCNA_01793at 1920.651 kb on + strand, within CCNA_01793at 1920.659 kb on - strand, within CCNA_01793at 1920.659 kb on - strand, within CCNA_01793at 1920.659 kb on - strand, within CCNA_01793at 1920.710 kb on + strand, within CCNA_01793at 1920.790 kb on - strand, within CCNA_01793at 1920.797 kb on + strand, within CCNA_01793at 1920.807 kb on + strand, within CCNA_01793

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,919,998 + +2.9
1,920,019 + +1.1
1,920,027 - -1.2
1,920,028 - +0.5
1,920,045 - +0.3
1,920,104 - CCNA_01793 0.14 +0.5
1,920,138 - CCNA_01793 0.18 -0.0
1,920,199 - CCNA_01793 0.24 +1.0
1,920,220 + CCNA_01793 0.26 +3.0
1,920,225 + CCNA_01793 0.27 +2.0
1,920,244 + CCNA_01793 0.28 +1.8
1,920,349 + CCNA_01793 0.39 +4.2
1,920,352 - CCNA_01793 0.39 +0.0
1,920,425 - CCNA_01793 0.47 -0.4
1,920,467 - CCNA_01793 0.51 +0.6
1,920,486 + CCNA_01793 0.53 +2.6
1,920,494 - CCNA_01793 0.53 +2.9
1,920,552 + CCNA_01793 0.59 -2.1
1,920,552 + CCNA_01793 0.59 +3.0
1,920,560 - CCNA_01793 0.60 +0.7
1,920,583 + CCNA_01793 0.62 -0.6
1,920,631 + CCNA_01793 0.67 +0.8
1,920,645 - CCNA_01793 0.69 +0.9
1,920,651 + CCNA_01793 0.69 +0.5
1,920,659 - CCNA_01793 0.70 +0.7
1,920,659 - CCNA_01793 0.70 +0.2
1,920,659 - CCNA_01793 0.70 -1.4
1,920,710 + CCNA_01793 0.75 +1.9
1,920,790 - CCNA_01793 0.83 -0.1
1,920,797 + CCNA_01793 0.84 -0.5
1,920,807 + CCNA_01793 0.85 -1.6

Or see this region's nucleotide sequence