Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01777

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01776 and CCNA_01777 are separated by 249 nucleotidesCCNA_01777 and CCNA_01778 are separated by 104 nucleotides CCNA_01776: CCNA_01776 - ribonuclease D, at 1,901,998 to 1,903,167 _01776 CCNA_01777: CCNA_01777 - hybrid sensor histidine kinase/receiver domain protein, at 1,903,417 to 1,905,099 _01777 CCNA_01778: CCNA_01778 - penicillin-binding protein, at 1,905,204 to 1,906,496 _01778 Position (kb) 1903 1904 1905 1906Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1903.204 kb on - strandat 1903.246 kb on + strandat 1903.270 kb on + strandat 1903.284 kb on + strandat 1903.302 kb on - strandat 1903.340 kb on - strandat 1903.353 kb on + strandat 1903.361 kb on + strandat 1903.361 kb on + strandat 1903.366 kb on + strandat 1903.374 kb on - strandat 1903.402 kb on + strandat 1903.519 kb on + strandat 1903.525 kb on - strandat 1903.545 kb on - strandat 1903.594 kb on + strand, within CCNA_01777at 1903.594 kb on + strand, within CCNA_01777at 1903.594 kb on + strand, within CCNA_01777at 1903.594 kb on + strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.616 kb on + strand, within CCNA_01777at 1903.634 kb on - strandat 1903.687 kb on - strand, within CCNA_01777at 1903.696 kb on + strand, within CCNA_01777at 1903.704 kb on - strand, within CCNA_01777at 1903.704 kb on - strand, within CCNA_01777at 1903.710 kb on + strand, within CCNA_01777at 1903.719 kb on - strand, within CCNA_01777at 1903.724 kb on - strand, within CCNA_01777at 1903.759 kb on + strand, within CCNA_01777at 1903.762 kb on - strand, within CCNA_01777at 1903.794 kb on + strand, within CCNA_01777at 1903.794 kb on + strand, within CCNA_01777at 1903.794 kb on + strand, within CCNA_01777at 1903.794 kb on + strand, within CCNA_01777at 1903.801 kb on + strand, within CCNA_01777at 1903.840 kb on - strand, within CCNA_01777at 1903.857 kb on + strand, within CCNA_01777at 1903.857 kb on - strand, within CCNA_01777at 1903.865 kb on - strand, within CCNA_01777at 1903.938 kb on + strand, within CCNA_01777at 1903.941 kb on - strand, within CCNA_01777at 1903.980 kb on + strand, within CCNA_01777at 1904.005 kb on + strand, within CCNA_01777at 1904.019 kb on - strand, within CCNA_01777at 1904.046 kb on + strand, within CCNA_01777at 1904.147 kb on + strand, within CCNA_01777at 1904.147 kb on + strand, within CCNA_01777at 1904.165 kb on - strand, within CCNA_01777at 1904.178 kb on + strand, within CCNA_01777at 1904.178 kb on + strand, within CCNA_01777at 1904.192 kb on - strand, within CCNA_01777at 1904.248 kb on - strand, within CCNA_01777at 1904.277 kb on + strand, within CCNA_01777at 1904.291 kb on + strand, within CCNA_01777at 1904.291 kb on + strand, within CCNA_01777at 1904.295 kb on + strand, within CCNA_01777at 1904.299 kb on - strand, within CCNA_01777at 1904.299 kb on - strand, within CCNA_01777at 1904.299 kb on - strand, within CCNA_01777at 1904.304 kb on - strand, within CCNA_01777at 1904.337 kb on - strand, within CCNA_01777at 1904.383 kb on + strand, within CCNA_01777at 1904.391 kb on - strand, within CCNA_01777at 1904.391 kb on - strand, within CCNA_01777at 1904.399 kb on - strand, within CCNA_01777at 1904.476 kb on + strand, within CCNA_01777at 1904.480 kb on - strand, within CCNA_01777at 1904.482 kb on + strand, within CCNA_01777at 1904.485 kb on - strand, within CCNA_01777at 1904.485 kb on - strand, within CCNA_01777at 1904.485 kb on - strand, within CCNA_01777at 1904.497 kb on - strand, within CCNA_01777at 1904.527 kb on - strand, within CCNA_01777at 1904.535 kb on + strand, within CCNA_01777at 1904.566 kb on + strand, within CCNA_01777at 1904.574 kb on - strand, within CCNA_01777at 1904.593 kb on - strand, within CCNA_01777at 1904.708 kb on + strand, within CCNA_01777at 1904.713 kb on + strand, within CCNA_01777at 1904.721 kb on - strand, within CCNA_01777at 1904.721 kb on - strand, within CCNA_01777at 1904.721 kb on - strand, within CCNA_01777at 1904.754 kb on + strand, within CCNA_01777at 1904.785 kb on - strand, within CCNA_01777at 1904.833 kb on - strand, within CCNA_01777at 1904.855 kb on + strand, within CCNA_01777at 1904.863 kb on - strand, within CCNA_01777at 1904.867 kb on + strand, within CCNA_01777at 1904.880 kb on - strand, within CCNA_01777at 1904.898 kb on + strand, within CCNA_01777at 1904.924 kb on + strand, within CCNA_01777at 1904.932 kb on - strandat 1904.932 kb on - strandat 1904.998 kb on + strandat 1905.095 kb on + strandat 1905.095 kb on + strandat 1905.095 kb on + strandat 1905.095 kb on + strandat 1905.096 kb on - strandat 1905.258 kb on - strandat 1905.268 kb on + strandat 1905.319 kb on + strandat 1905.509 kb on + strand, within CCNA_01778at 1905.512 kb on - strand, within CCNA_01778at 1905.517 kb on - strand, within CCNA_01778at 1905.520 kb on + strand, within CCNA_01778at 1905.566 kb on - strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.667 kb on + strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.704 kb on - strand, within CCNA_01778at 1905.725 kb on + strand, within CCNA_01778at 1905.727 kb on + strand, within CCNA_01778at 1905.740 kb on - strand, within CCNA_01778at 1905.761 kb on + strand, within CCNA_01778at 1905.827 kb on + strand, within CCNA_01778at 1905.854 kb on - strand, within CCNA_01778at 1905.882 kb on + strand, within CCNA_01778at 1905.887 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.898 kb on + strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.907 kb on + strand, within CCNA_01778at 1905.915 kb on - strand, within CCNA_01778at 1905.915 kb on - strandat 1905.932 kb on + strand, within CCNA_01778at 1905.983 kb on + strand, within CCNA_01778at 1906.005 kb on - strand, within CCNA_01778at 1906.011 kb on - strand, within CCNA_01778at 1906.019 kb on - strand, within CCNA_01778at 1906.028 kb on + strand, within CCNA_01778

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,903,204 - -1.0
1,903,246 + +1.7
1,903,270 + +1.3
1,903,284 + +1.0
1,903,302 - -1.1
1,903,340 - -1.5
1,903,353 + +1.2
1,903,361 + +2.0
1,903,361 + +1.0
1,903,366 + +1.0
1,903,374 - +0.0
1,903,402 + +0.9
1,903,519 + -0.3
1,903,525 - -3.4
1,903,545 - +0.0
1,903,594 + CCNA_01777 0.11 +2.5
1,903,594 + CCNA_01777 0.11 +1.7
1,903,594 + CCNA_01777 0.11 +1.2
1,903,594 + CCNA_01777 0.11 +1.2
1,903,602 - CCNA_01777 0.11 -1.4
1,903,602 - CCNA_01777 0.11 -0.1
1,903,602 - CCNA_01777 0.11 -1.3
1,903,616 + CCNA_01777 0.12 +1.4
1,903,634 - +1.9
1,903,687 - CCNA_01777 0.16 +0.2
1,903,696 + CCNA_01777 0.17 +3.5
1,903,704 - CCNA_01777 0.17 +2.7
1,903,704 - CCNA_01777 0.17 -0.3
1,903,710 + CCNA_01777 0.17 +0.8
1,903,719 - CCNA_01777 0.18 +0.0
1,903,724 - CCNA_01777 0.18 -0.2
1,903,759 + CCNA_01777 0.20 +1.7
1,903,762 - CCNA_01777 0.20 -1.1
1,903,794 + CCNA_01777 0.22 +1.9
1,903,794 + CCNA_01777 0.22 +0.9
1,903,794 + CCNA_01777 0.22 +1.2
1,903,794 + CCNA_01777 0.22 +1.3
1,903,801 + CCNA_01777 0.23 -0.7
1,903,840 - CCNA_01777 0.25 -0.8
1,903,857 + CCNA_01777 0.26 +3.7
1,903,857 - CCNA_01777 0.26 +0.0
1,903,865 - CCNA_01777 0.27 +0.3
1,903,938 + CCNA_01777 0.31 +0.6
1,903,941 - CCNA_01777 0.31 -1.1
1,903,980 + CCNA_01777 0.33 +0.9
1,904,005 + CCNA_01777 0.35 +1.6
1,904,019 - CCNA_01777 0.36 +1.6
1,904,046 + CCNA_01777 0.37 +1.1
1,904,147 + CCNA_01777 0.43 +0.1
1,904,147 + CCNA_01777 0.43 +1.6
1,904,165 - CCNA_01777 0.44 +0.5
1,904,178 + CCNA_01777 0.45 +1.2
1,904,178 + CCNA_01777 0.45 +0.8
1,904,192 - CCNA_01777 0.46 -0.7
1,904,248 - CCNA_01777 0.49 -0.7
1,904,277 + CCNA_01777 0.51 +2.3
1,904,291 + CCNA_01777 0.52 +1.5
1,904,291 + CCNA_01777 0.52 +2.7
1,904,295 + CCNA_01777 0.52 +2.4
1,904,299 - CCNA_01777 0.52 +1.1
1,904,299 - CCNA_01777 0.52 +1.0
1,904,299 - CCNA_01777 0.52 +0.2
1,904,304 - CCNA_01777 0.53 +0.9
1,904,337 - CCNA_01777 0.55 -1.0
1,904,383 + CCNA_01777 0.57 +1.1
1,904,391 - CCNA_01777 0.58 -0.1
1,904,391 - CCNA_01777 0.58 -2.2
1,904,399 - CCNA_01777 0.58 +2.8
1,904,476 + CCNA_01777 0.63 +1.7
1,904,480 - CCNA_01777 0.63 -0.4
1,904,482 + CCNA_01777 0.63 +3.4
1,904,485 - CCNA_01777 0.63 -0.7
1,904,485 - CCNA_01777 0.63 +0.2
1,904,485 - CCNA_01777 0.63 -0.1
1,904,497 - CCNA_01777 0.64 +0.3
1,904,527 - CCNA_01777 0.66 -0.4
1,904,535 + CCNA_01777 0.66 +3.2
1,904,566 + CCNA_01777 0.68 +2.7
1,904,574 - CCNA_01777 0.69 +2.3
1,904,593 - CCNA_01777 0.70 -0.7
1,904,708 + CCNA_01777 0.77 +2.5
1,904,713 + CCNA_01777 0.77 +2.0
1,904,721 - CCNA_01777 0.77 +0.9
1,904,721 - CCNA_01777 0.77 +1.2
1,904,721 - CCNA_01777 0.77 -2.4
1,904,754 + CCNA_01777 0.79 +2.2
1,904,785 - CCNA_01777 0.81 +0.7
1,904,833 - CCNA_01777 0.84 +0.5
1,904,855 + CCNA_01777 0.85 +0.9
1,904,863 - CCNA_01777 0.86 +0.9
1,904,867 + CCNA_01777 0.86 +1.8
1,904,880 - CCNA_01777 0.87 -0.7
1,904,898 + CCNA_01777 0.88 +1.7
1,904,924 + CCNA_01777 0.90 +2.5
1,904,932 - -0.5
1,904,932 - -0.9
1,904,998 + +1.3
1,905,095 + +1.3
1,905,095 + +0.3
1,905,095 + +0.9
1,905,095 + +2.1
1,905,096 - +0.7
1,905,258 - -0.5
1,905,268 + +2.0
1,905,319 + +0.6
1,905,509 + CCNA_01778 0.24 +3.3
1,905,512 - CCNA_01778 0.24 +1.2
1,905,517 - CCNA_01778 0.24 -0.4
1,905,520 + CCNA_01778 0.24 +1.4
1,905,566 - CCNA_01778 0.28 +0.2
1,905,667 + CCNA_01778 0.36 +0.4
1,905,667 + CCNA_01778 0.36 -0.3
1,905,667 + CCNA_01778 0.36 +1.8
1,905,667 + CCNA_01778 0.36 +2.2
1,905,667 + CCNA_01778 0.36 +1.7
1,905,667 + CCNA_01778 0.36 +0.3
1,905,675 - CCNA_01778 0.36 -0.6
1,905,675 - CCNA_01778 0.36 -0.4
1,905,704 - CCNA_01778 0.39 +1.0
1,905,725 + CCNA_01778 0.40 -1.2
1,905,727 + CCNA_01778 0.40 +2.3
1,905,740 - CCNA_01778 0.41 +0.4
1,905,761 + CCNA_01778 0.43 +1.7
1,905,827 + CCNA_01778 0.48 +2.6
1,905,854 - CCNA_01778 0.50 -0.9
1,905,882 + CCNA_01778 0.52 +0.3
1,905,887 + CCNA_01778 0.53 +2.8
1,905,897 + CCNA_01778 0.54 +1.5
1,905,897 + CCNA_01778 0.54 +1.6
1,905,897 + CCNA_01778 0.54 +1.5
1,905,897 + CCNA_01778 0.54 +2.0
1,905,897 + CCNA_01778 0.54 +1.4
1,905,897 + CCNA_01778 0.54 +0.9
1,905,897 + CCNA_01778 0.54 +1.1
1,905,897 + CCNA_01778 0.54 +2.2
1,905,897 + CCNA_01778 0.54 +1.2
1,905,897 + CCNA_01778 0.54 +1.0
1,905,898 + CCNA_01778 0.54 +1.5
1,905,905 - CCNA_01778 0.54 -0.1
1,905,905 - CCNA_01778 0.54 +0.9
1,905,905 - CCNA_01778 0.54 -0.9
1,905,905 - CCNA_01778 0.54 +0.5
1,905,905 - CCNA_01778 0.54 -1.5
1,905,905 - CCNA_01778 0.54 +0.5
1,905,905 - CCNA_01778 0.54 -0.5
1,905,905 - CCNA_01778 0.54 -0.4
1,905,905 - CCNA_01778 0.54 +0.8
1,905,907 + CCNA_01778 0.54 +2.9
1,905,915 - CCNA_01778 0.55 -1.4
1,905,915 - +0.9
1,905,932 + CCNA_01778 0.56 +1.8
1,905,983 + CCNA_01778 0.60 +2.5
1,906,005 - CCNA_01778 0.62 -0.3
1,906,011 - CCNA_01778 0.62 -1.7
1,906,019 - CCNA_01778 0.63 -1.5
1,906,028 + CCNA_01778 0.64 +0.7

Or see this region's nucleotide sequence