Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01776 and CCNA_01777 are separated by 249 nucleotides CCNA_01777 and CCNA_01778 are separated by 104 nucleotides
CCNA_01776: CCNA_01776 - ribonuclease D, at 1,901,998 to 1,903,167
_01776
CCNA_01777: CCNA_01777 - hybrid sensor histidine kinase/receiver domain protein, at 1,903,417 to 1,905,099
_01777
CCNA_01778: CCNA_01778 - penicillin-binding protein, at 1,905,204 to 1,906,496
_01778
Position (kb)
1903
1904
1905
1906 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1903.204 kb on - strand at 1903.246 kb on + strand at 1903.270 kb on + strand at 1903.284 kb on + strand at 1903.302 kb on - strand at 1903.340 kb on - strand at 1903.353 kb on + strand at 1903.361 kb on + strand at 1903.361 kb on + strand at 1903.366 kb on + strand at 1903.374 kb on - strand at 1903.402 kb on + strand at 1903.519 kb on + strand at 1903.525 kb on - strand at 1903.545 kb on - strand at 1903.594 kb on + strand, within CCNA_01777 at 1903.594 kb on + strand, within CCNA_01777 at 1903.594 kb on + strand, within CCNA_01777 at 1903.594 kb on + strand, within CCNA_01777 at 1903.602 kb on - strand, within CCNA_01777 at 1903.602 kb on - strand, within CCNA_01777 at 1903.602 kb on - strand, within CCNA_01777 at 1903.616 kb on + strand, within CCNA_01777 at 1903.634 kb on - strand at 1903.687 kb on - strand, within CCNA_01777 at 1903.696 kb on + strand, within CCNA_01777 at 1903.704 kb on - strand, within CCNA_01777 at 1903.704 kb on - strand, within CCNA_01777 at 1903.710 kb on + strand, within CCNA_01777 at 1903.719 kb on - strand, within CCNA_01777 at 1903.724 kb on - strand, within CCNA_01777 at 1903.759 kb on + strand, within CCNA_01777 at 1903.762 kb on - strand, within CCNA_01777 at 1903.794 kb on + strand, within CCNA_01777 at 1903.794 kb on + strand, within CCNA_01777 at 1903.794 kb on + strand, within CCNA_01777 at 1903.794 kb on + strand, within CCNA_01777 at 1903.801 kb on + strand, within CCNA_01777 at 1903.840 kb on - strand, within CCNA_01777 at 1903.857 kb on + strand, within CCNA_01777 at 1903.857 kb on - strand, within CCNA_01777 at 1903.865 kb on - strand, within CCNA_01777 at 1903.938 kb on + strand, within CCNA_01777 at 1903.941 kb on - strand, within CCNA_01777 at 1903.980 kb on + strand, within CCNA_01777 at 1904.005 kb on + strand, within CCNA_01777 at 1904.019 kb on - strand, within CCNA_01777 at 1904.046 kb on + strand, within CCNA_01777 at 1904.147 kb on + strand, within CCNA_01777 at 1904.147 kb on + strand, within CCNA_01777 at 1904.165 kb on - strand, within CCNA_01777 at 1904.178 kb on + strand, within CCNA_01777 at 1904.178 kb on + strand, within CCNA_01777 at 1904.192 kb on - strand, within CCNA_01777 at 1904.248 kb on - strand, within CCNA_01777 at 1904.277 kb on + strand, within CCNA_01777 at 1904.291 kb on + strand, within CCNA_01777 at 1904.291 kb on + strand, within CCNA_01777 at 1904.295 kb on + strand, within CCNA_01777 at 1904.299 kb on - strand, within CCNA_01777 at 1904.299 kb on - strand, within CCNA_01777 at 1904.299 kb on - strand, within CCNA_01777 at 1904.304 kb on - strand, within CCNA_01777 at 1904.337 kb on - strand, within CCNA_01777 at 1904.383 kb on + strand, within CCNA_01777 at 1904.391 kb on - strand, within CCNA_01777 at 1904.391 kb on - strand, within CCNA_01777 at 1904.399 kb on - strand, within CCNA_01777 at 1904.476 kb on + strand, within CCNA_01777 at 1904.480 kb on - strand, within CCNA_01777 at 1904.482 kb on + strand, within CCNA_01777 at 1904.485 kb on - strand, within CCNA_01777 at 1904.485 kb on - strand, within CCNA_01777 at 1904.485 kb on - strand, within CCNA_01777 at 1904.497 kb on - strand, within CCNA_01777 at 1904.527 kb on - strand, within CCNA_01777 at 1904.535 kb on + strand, within CCNA_01777 at 1904.566 kb on + strand, within CCNA_01777 at 1904.574 kb on - strand, within CCNA_01777 at 1904.593 kb on - strand, within CCNA_01777 at 1904.708 kb on + strand, within CCNA_01777 at 1904.713 kb on + strand, within CCNA_01777 at 1904.721 kb on - strand, within CCNA_01777 at 1904.721 kb on - strand, within CCNA_01777 at 1904.721 kb on - strand, within CCNA_01777 at 1904.754 kb on + strand, within CCNA_01777 at 1904.785 kb on - strand, within CCNA_01777 at 1904.833 kb on - strand, within CCNA_01777 at 1904.855 kb on + strand, within CCNA_01777 at 1904.863 kb on - strand, within CCNA_01777 at 1904.867 kb on + strand, within CCNA_01777 at 1904.880 kb on - strand, within CCNA_01777 at 1904.898 kb on + strand, within CCNA_01777 at 1904.924 kb on + strand, within CCNA_01777 at 1904.932 kb on - strand at 1904.932 kb on - strand at 1904.998 kb on + strand at 1905.095 kb on + strand at 1905.095 kb on + strand at 1905.095 kb on + strand at 1905.095 kb on + strand at 1905.096 kb on - strand at 1905.258 kb on - strand at 1905.268 kb on + strand at 1905.319 kb on + strand at 1905.509 kb on + strand, within CCNA_01778 at 1905.512 kb on - strand, within CCNA_01778 at 1905.517 kb on - strand, within CCNA_01778 at 1905.520 kb on + strand, within CCNA_01778 at 1905.566 kb on - strand, within CCNA_01778 at 1905.667 kb on + strand, within CCNA_01778 at 1905.667 kb on + strand, within CCNA_01778 at 1905.667 kb on + strand, within CCNA_01778 at 1905.667 kb on + strand, within CCNA_01778 at 1905.667 kb on + strand, within CCNA_01778 at 1905.667 kb on + strand, within CCNA_01778 at 1905.675 kb on - strand, within CCNA_01778 at 1905.675 kb on - strand, within CCNA_01778 at 1905.704 kb on - strand, within CCNA_01778 at 1905.725 kb on + strand, within CCNA_01778 at 1905.727 kb on + strand, within CCNA_01778 at 1905.740 kb on - strand, within CCNA_01778 at 1905.761 kb on + strand, within CCNA_01778 at 1905.827 kb on + strand, within CCNA_01778 at 1905.854 kb on - strand, within CCNA_01778 at 1905.882 kb on + strand, within CCNA_01778 at 1905.887 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.898 kb on + strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.907 kb on + strand, within CCNA_01778 at 1905.915 kb on - strand, within CCNA_01778 at 1905.915 kb on - strand at 1905.932 kb on + strand, within CCNA_01778 at 1905.983 kb on + strand, within CCNA_01778 at 1906.005 kb on - strand, within CCNA_01778 at 1906.011 kb on - strand, within CCNA_01778 at 1906.019 kb on - strand, within CCNA_01778 at 1906.028 kb on + strand, within CCNA_01778
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 1,903,204 - -1.0 1,903,246 + +1.7 1,903,270 + +1.3 1,903,284 + +1.0 1,903,302 - -1.1 1,903,340 - -1.5 1,903,353 + +1.2 1,903,361 + +2.0 1,903,361 + +1.0 1,903,366 + +1.0 1,903,374 - +0.0 1,903,402 + +0.9 1,903,519 + -0.3 1,903,525 - -3.4 1,903,545 - +0.0 1,903,594 + CCNA_01777 0.11 +2.5 1,903,594 + CCNA_01777 0.11 +1.7 1,903,594 + CCNA_01777 0.11 +1.2 1,903,594 + CCNA_01777 0.11 +1.2 1,903,602 - CCNA_01777 0.11 -1.4 1,903,602 - CCNA_01777 0.11 -0.1 1,903,602 - CCNA_01777 0.11 -1.3 1,903,616 + CCNA_01777 0.12 +1.4 1,903,634 - +1.9 1,903,687 - CCNA_01777 0.16 +0.2 1,903,696 + CCNA_01777 0.17 +3.5 1,903,704 - CCNA_01777 0.17 +2.7 1,903,704 - CCNA_01777 0.17 -0.3 1,903,710 + CCNA_01777 0.17 +0.8 1,903,719 - CCNA_01777 0.18 +0.0 1,903,724 - CCNA_01777 0.18 -0.2 1,903,759 + CCNA_01777 0.20 +1.7 1,903,762 - CCNA_01777 0.20 -1.1 1,903,794 + CCNA_01777 0.22 +1.9 1,903,794 + CCNA_01777 0.22 +0.9 1,903,794 + CCNA_01777 0.22 +1.2 1,903,794 + CCNA_01777 0.22 +1.3 1,903,801 + CCNA_01777 0.23 -0.7 1,903,840 - CCNA_01777 0.25 -0.8 1,903,857 + CCNA_01777 0.26 +3.7 1,903,857 - CCNA_01777 0.26 +0.0 1,903,865 - CCNA_01777 0.27 +0.3 1,903,938 + CCNA_01777 0.31 +0.6 1,903,941 - CCNA_01777 0.31 -1.1 1,903,980 + CCNA_01777 0.33 +0.9 1,904,005 + CCNA_01777 0.35 +1.6 1,904,019 - CCNA_01777 0.36 +1.6 1,904,046 + CCNA_01777 0.37 +1.1 1,904,147 + CCNA_01777 0.43 +0.1 1,904,147 + CCNA_01777 0.43 +1.6 1,904,165 - CCNA_01777 0.44 +0.5 1,904,178 + CCNA_01777 0.45 +1.2 1,904,178 + CCNA_01777 0.45 +0.8 1,904,192 - CCNA_01777 0.46 -0.7 1,904,248 - CCNA_01777 0.49 -0.7 1,904,277 + CCNA_01777 0.51 +2.3 1,904,291 + CCNA_01777 0.52 +1.5 1,904,291 + CCNA_01777 0.52 +2.7 1,904,295 + CCNA_01777 0.52 +2.4 1,904,299 - CCNA_01777 0.52 +1.1 1,904,299 - CCNA_01777 0.52 +1.0 1,904,299 - CCNA_01777 0.52 +0.2 1,904,304 - CCNA_01777 0.53 +0.9 1,904,337 - CCNA_01777 0.55 -1.0 1,904,383 + CCNA_01777 0.57 +1.1 1,904,391 - CCNA_01777 0.58 -0.1 1,904,391 - CCNA_01777 0.58 -2.2 1,904,399 - CCNA_01777 0.58 +2.8 1,904,476 + CCNA_01777 0.63 +1.7 1,904,480 - CCNA_01777 0.63 -0.4 1,904,482 + CCNA_01777 0.63 +3.4 1,904,485 - CCNA_01777 0.63 -0.7 1,904,485 - CCNA_01777 0.63 +0.2 1,904,485 - CCNA_01777 0.63 -0.1 1,904,497 - CCNA_01777 0.64 +0.3 1,904,527 - CCNA_01777 0.66 -0.4 1,904,535 + CCNA_01777 0.66 +3.2 1,904,566 + CCNA_01777 0.68 +2.7 1,904,574 - CCNA_01777 0.69 +2.3 1,904,593 - CCNA_01777 0.70 -0.7 1,904,708 + CCNA_01777 0.77 +2.5 1,904,713 + CCNA_01777 0.77 +2.0 1,904,721 - CCNA_01777 0.77 +0.9 1,904,721 - CCNA_01777 0.77 +1.2 1,904,721 - CCNA_01777 0.77 -2.4 1,904,754 + CCNA_01777 0.79 +2.2 1,904,785 - CCNA_01777 0.81 +0.7 1,904,833 - CCNA_01777 0.84 +0.5 1,904,855 + CCNA_01777 0.85 +0.9 1,904,863 - CCNA_01777 0.86 +0.9 1,904,867 + CCNA_01777 0.86 +1.8 1,904,880 - CCNA_01777 0.87 -0.7 1,904,898 + CCNA_01777 0.88 +1.7 1,904,924 + CCNA_01777 0.90 +2.5 1,904,932 - -0.5 1,904,932 - -0.9 1,904,998 + +1.3 1,905,095 + +1.3 1,905,095 + +0.3 1,905,095 + +0.9 1,905,095 + +2.1 1,905,096 - +0.7 1,905,258 - -0.5 1,905,268 + +2.0 1,905,319 + +0.6 1,905,509 + CCNA_01778 0.24 +3.3 1,905,512 - CCNA_01778 0.24 +1.2 1,905,517 - CCNA_01778 0.24 -0.4 1,905,520 + CCNA_01778 0.24 +1.4 1,905,566 - CCNA_01778 0.28 +0.2 1,905,667 + CCNA_01778 0.36 +0.4 1,905,667 + CCNA_01778 0.36 -0.3 1,905,667 + CCNA_01778 0.36 +1.8 1,905,667 + CCNA_01778 0.36 +2.2 1,905,667 + CCNA_01778 0.36 +1.7 1,905,667 + CCNA_01778 0.36 +0.3 1,905,675 - CCNA_01778 0.36 -0.6 1,905,675 - CCNA_01778 0.36 -0.4 1,905,704 - CCNA_01778 0.39 +1.0 1,905,725 + CCNA_01778 0.40 -1.2 1,905,727 + CCNA_01778 0.40 +2.3 1,905,740 - CCNA_01778 0.41 +0.4 1,905,761 + CCNA_01778 0.43 +1.7 1,905,827 + CCNA_01778 0.48 +2.6 1,905,854 - CCNA_01778 0.50 -0.9 1,905,882 + CCNA_01778 0.52 +0.3 1,905,887 + CCNA_01778 0.53 +2.8 1,905,897 + CCNA_01778 0.54 +1.5 1,905,897 + CCNA_01778 0.54 +1.6 1,905,897 + CCNA_01778 0.54 +1.5 1,905,897 + CCNA_01778 0.54 +2.0 1,905,897 + CCNA_01778 0.54 +1.4 1,905,897 + CCNA_01778 0.54 +0.9 1,905,897 + CCNA_01778 0.54 +1.1 1,905,897 + CCNA_01778 0.54 +2.2 1,905,897 + CCNA_01778 0.54 +1.2 1,905,897 + CCNA_01778 0.54 +1.0 1,905,898 + CCNA_01778 0.54 +1.5 1,905,905 - CCNA_01778 0.54 -0.1 1,905,905 - CCNA_01778 0.54 +0.9 1,905,905 - CCNA_01778 0.54 -0.9 1,905,905 - CCNA_01778 0.54 +0.5 1,905,905 - CCNA_01778 0.54 -1.5 1,905,905 - CCNA_01778 0.54 +0.5 1,905,905 - CCNA_01778 0.54 -0.5 1,905,905 - CCNA_01778 0.54 -0.4 1,905,905 - CCNA_01778 0.54 +0.8 1,905,907 + CCNA_01778 0.54 +2.9 1,905,915 - CCNA_01778 0.55 -1.4 1,905,915 - +0.9 1,905,932 + CCNA_01778 0.56 +1.8 1,905,983 + CCNA_01778 0.60 +2.5 1,906,005 - CCNA_01778 0.62 -0.3 1,906,011 - CCNA_01778 0.62 -1.7 1,906,019 - CCNA_01778 0.63 -1.5 1,906,028 + CCNA_01778 0.64 +0.7
Or see this region's nucleotide sequence