Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01739

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01738 and CCNA_01739 are separated by 204 nucleotidesCCNA_01739 and CCNA_01740 are separated by 13 nucleotidesCCNA_01740 and CCNA_01741 are separated by 14 nucleotidesCCNA_01741 and CCNA_01742 are separated by 268 nucleotides CCNA_01738: CCNA_01738 - TonB-dependent outer membrane receptor, at 1,866,634 to 1,869,063 _01738 CCNA_01739: CCNA_01739 - LSU ribosomal protein L9P, at 1,869,268 to 1,869,852 _01739 CCNA_01740: CCNA_01740 - SSU ribosomal protein S18P, at 1,869,866 to 1,870,144 _01740 CCNA_01741: CCNA_01741 - SSU ribosomal protein S6P, at 1,870,159 to 1,870,539 _01741 CCNA_01742: CCNA_01742 - hypothetical protein, at 1,870,808 to 1,871,467 _01742 Position (kb) 1869 1870Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1868.275 kb on - strand, within CCNA_01738at 1868.275 kb on - strand, within CCNA_01738at 1868.275 kb on - strand, within CCNA_01738at 1868.275 kb on - strand, within CCNA_01738at 1868.275 kb on - strand, within CCNA_01738at 1868.275 kb on - strand, within CCNA_01738at 1868.296 kb on - strand, within CCNA_01738at 1868.309 kb on - strand, within CCNA_01738at 1868.337 kb on + strand, within CCNA_01738at 1868.427 kb on - strand, within CCNA_01738at 1868.427 kb on - strand, within CCNA_01738at 1868.427 kb on - strand, within CCNA_01738at 1868.477 kb on + strand, within CCNA_01738at 1868.489 kb on + strand, within CCNA_01738at 1868.491 kb on + strand, within CCNA_01738at 1868.497 kb on - strand, within CCNA_01738at 1868.500 kb on + strand, within CCNA_01738at 1868.501 kb on + strand, within CCNA_01738at 1868.509 kb on - strand, within CCNA_01738at 1868.509 kb on - strand, within CCNA_01738at 1868.552 kb on - strand, within CCNA_01738at 1868.584 kb on - strand, within CCNA_01738at 1868.607 kb on + strand, within CCNA_01738at 1868.628 kb on - strand, within CCNA_01738at 1868.628 kb on - strand, within CCNA_01738at 1868.632 kb on + strand, within CCNA_01738at 1868.640 kb on - strand, within CCNA_01738at 1868.687 kb on + strand, within CCNA_01738at 1868.692 kb on + strand, within CCNA_01738at 1868.695 kb on - strand, within CCNA_01738at 1868.695 kb on - strand, within CCNA_01738at 1868.700 kb on - strand, within CCNA_01738at 1868.700 kb on - strand, within CCNA_01738at 1868.700 kb on - strand, within CCNA_01738at 1868.720 kb on + strand, within CCNA_01738at 1868.720 kb on + strand, within CCNA_01738at 1868.720 kb on + strand, within CCNA_01738at 1868.728 kb on - strand, within CCNA_01738at 1868.730 kb on + strand, within CCNA_01738at 1868.738 kb on - strand, within CCNA_01738at 1868.742 kb on + strand, within CCNA_01738at 1868.742 kb on + strand, within CCNA_01738at 1868.742 kb on + strand, within CCNA_01738at 1868.750 kb on - strand, within CCNA_01738at 1868.784 kb on - strand, within CCNA_01738at 1868.784 kb on - strand, within CCNA_01738at 1868.784 kb on - strand, within CCNA_01738at 1868.789 kb on - strand, within CCNA_01738at 1868.800 kb on + strand, within CCNA_01738at 1868.818 kb on + strand, within CCNA_01738at 1868.822 kb on + strandat 1868.903 kb on - strandat 1868.905 kb on + strandat 1868.920 kb on - strandat 1868.922 kb on - strandat 1868.979 kb on - strandat 1869.012 kb on - strandat 1869.025 kb on - strandat 1869.050 kb on + strandat 1869.058 kb on - strandat 1869.273 kb on - strandat 1869.273 kb on - strandat 1869.273 kb on - strandat 1869.273 kb on - strandat 1869.327 kb on - strand, within CCNA_01739at 1869.431 kb on - strand, within CCNA_01739at 1869.431 kb on - strand, within CCNA_01739at 1869.432 kb on - strand, within CCNA_01739at 1869.454 kb on - strand, within CCNA_01739at 1869.487 kb on - strand, within CCNA_01739at 1869.632 kb on - strand, within CCNA_01739at 1869.642 kb on - strand, within CCNA_01739at 1869.642 kb on - strand, within CCNA_01739at 1869.642 kb on - strand, within CCNA_01739at 1869.747 kb on - strand, within CCNA_01739at 1869.752 kb on - strand, within CCNA_01739at 1869.884 kb on - strandat 1870.778 kb on + strandat 1870.778 kb on + strandat 1870.786 kb on - strandat 1870.786 kb on - strandat 1870.818 kb on + strandat 1870.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,868,275 - CCNA_01738 0.68 +1.4
1,868,275 - CCNA_01738 0.68 +0.4
1,868,275 - CCNA_01738 0.68 -0.1
1,868,275 - CCNA_01738 0.68 +0.7
1,868,275 - CCNA_01738 0.68 +2.1
1,868,275 - CCNA_01738 0.68 +1.7
1,868,296 - CCNA_01738 0.68 +2.0
1,868,309 - CCNA_01738 0.69 -1.7
1,868,337 + CCNA_01738 0.70 +0.3
1,868,427 - CCNA_01738 0.74 -0.2
1,868,427 - CCNA_01738 0.74 +0.7
1,868,427 - CCNA_01738 0.74 +0.1
1,868,477 + CCNA_01738 0.76 -0.2
1,868,489 + CCNA_01738 0.76 -1.8
1,868,491 + CCNA_01738 0.76 +0.2
1,868,497 - CCNA_01738 0.77 +2.8
1,868,500 + CCNA_01738 0.77 -0.5
1,868,501 + CCNA_01738 0.77 +0.4
1,868,509 - CCNA_01738 0.77 +1.7
1,868,509 - CCNA_01738 0.77 -0.0
1,868,552 - CCNA_01738 0.79 -0.9
1,868,584 - CCNA_01738 0.80 +2.3
1,868,607 + CCNA_01738 0.81 -0.8
1,868,628 - CCNA_01738 0.82 -0.1
1,868,628 - CCNA_01738 0.82 +0.8
1,868,632 + CCNA_01738 0.82 +0.0
1,868,640 - CCNA_01738 0.83 +0.1
1,868,687 + CCNA_01738 0.84 +0.4
1,868,692 + CCNA_01738 0.85 -0.5
1,868,695 - CCNA_01738 0.85 -0.2
1,868,695 - CCNA_01738 0.85 +1.1
1,868,700 - CCNA_01738 0.85 -0.4
1,868,700 - CCNA_01738 0.85 +2.0
1,868,700 - CCNA_01738 0.85 +0.0
1,868,720 + CCNA_01738 0.86 -0.5
1,868,720 + CCNA_01738 0.86 +0.1
1,868,720 + CCNA_01738 0.86 -0.5
1,868,728 - CCNA_01738 0.86 +0.7
1,868,730 + CCNA_01738 0.86 +3.0
1,868,738 - CCNA_01738 0.87 +0.7
1,868,742 + CCNA_01738 0.87 +0.7
1,868,742 + CCNA_01738 0.87 +0.5
1,868,742 + CCNA_01738 0.87 +1.7
1,868,750 - CCNA_01738 0.87 +2.1
1,868,784 - CCNA_01738 0.88 +2.0
1,868,784 - CCNA_01738 0.88 +0.3
1,868,784 - CCNA_01738 0.88 +1.4
1,868,789 - CCNA_01738 0.89 +1.0
1,868,800 + CCNA_01738 0.89 +0.0
1,868,818 + CCNA_01738 0.90 +0.4
1,868,822 + +2.5
1,868,903 - +1.0
1,868,905 + -0.9
1,868,920 - -0.8
1,868,922 - +0.9
1,868,979 - +0.8
1,869,012 - +1.2
1,869,025 - +1.5
1,869,050 + +0.2
1,869,058 - -1.0
1,869,273 - +2.6
1,869,273 - +2.5
1,869,273 - +3.1
1,869,273 - +1.9
1,869,327 - CCNA_01739 0.10 +1.0
1,869,431 - CCNA_01739 0.28 +1.5
1,869,431 - CCNA_01739 0.28 +1.7
1,869,432 - CCNA_01739 0.28 +1.5
1,869,454 - CCNA_01739 0.32 +1.4
1,869,487 - CCNA_01739 0.37 +1.6
1,869,632 - CCNA_01739 0.62 +1.6
1,869,642 - CCNA_01739 0.64 +2.3
1,869,642 - CCNA_01739 0.64 +2.0
1,869,642 - CCNA_01739 0.64 +1.0
1,869,747 - CCNA_01739 0.82 +1.1
1,869,752 - CCNA_01739 0.83 +2.5
1,869,884 - +1.9
1,870,778 + -0.6
1,870,778 + +4.2
1,870,786 - -2.1
1,870,786 - -0.7
1,870,818 + +3.0
1,870,826 - -0.7

Or see this region's nucleotide sequence