Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00764 and CCNA_00765 are separated by 255 nucleotides CCNA_00765 and CCNA_00766 are separated by 158 nucleotides CCNA_00766 and CCNA_00767 are separated by 37 nucleotides
CCNA_00764: CCNA_00764 - electron transfer flavoprotein beta subunit, at 822,151 to 822,897
_00764
CCNA_00765: CCNA_00765 - hypothetical protein, at 823,153 to 823,443
_00765
CCNA_00766: CCNA_00766 - cobalamin adenosyltransferase family protein, at 823,602 to 824,180
_00766
CCNA_00767: CCNA_00767 - hypothetical protein, at 824,218 to 824,421
_00767
Position (kb) 823
824 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 822.912 kb on - strand at 822.917 kb on - strand at 822.919 kb on - strand at 822.995 kb on - strand at 823.047 kb on + strand at 823.048 kb on + strand at 823.056 kb on - strand at 823.071 kb on + strand at 823.071 kb on + strand at 823.089 kb on + strand at 823.107 kb on + strand at 823.107 kb on + strand at 823.107 kb on + strand at 823.114 kb on + strand at 823.115 kb on - strand at 823.122 kb on - strand at 823.144 kb on + strand at 823.145 kb on + strand at 823.158 kb on - strand at 823.163 kb on + strand at 823.184 kb on - strand, within CCNA_00765 at 823.195 kb on - strand, within CCNA_00765 at 823.207 kb on - strand, within CCNA_00765 at 823.214 kb on - strand, within CCNA_00765 at 823.229 kb on + strand, within CCNA_00765 at 823.279 kb on + strand, within CCNA_00765 at 823.353 kb on + strand, within CCNA_00765 at 823.353 kb on + strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.368 kb on + strand, within CCNA_00765 at 823.368 kb on + strand, within CCNA_00765 at 823.395 kb on - strand, within CCNA_00765 at 823.449 kb on + strand at 823.457 kb on - strand at 823.458 kb on + strand at 823.477 kb on + strand at 823.505 kb on + strand at 823.505 kb on + strand at 823.505 kb on - strand at 823.513 kb on - strand at 823.513 kb on - strand at 823.513 kb on - strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.536 kb on + strand at 823.536 kb on + strand at 823.537 kb on - strand at 823.539 kb on - strand at 823.560 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.575 kb on + strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.583 kb on - strand at 823.597 kb on + strand at 823.597 kb on + strand at 823.618 kb on + strand at 823.618 kb on + strand at 823.743 kb on - strand, within CCNA_00766 at 823.743 kb on - strand, within CCNA_00766 at 823.746 kb on + strand, within CCNA_00766 at 823.754 kb on - strand, within CCNA_00766 at 823.754 kb on - strand, within CCNA_00766 at 823.770 kb on + strand, within CCNA_00766 at 823.778 kb on - strand, within CCNA_00766 at 823.790 kb on + strand, within CCNA_00766 at 823.791 kb on + strand, within CCNA_00766 at 823.791 kb on + strand, within CCNA_00766 at 823.804 kb on - strand, within CCNA_00766 at 823.824 kb on - strand, within CCNA_00766 at 823.831 kb on + strand, within CCNA_00766 at 823.836 kb on + strand, within CCNA_00766 at 823.841 kb on + strand, within CCNA_00766 at 823.844 kb on - strand, within CCNA_00766 at 823.863 kb on - strand, within CCNA_00766 at 823.904 kb on - strand, within CCNA_00766 at 823.935 kb on - strand, within CCNA_00766 at 823.935 kb on - strand, within CCNA_00766 at 823.940 kb on + strand, within CCNA_00766 at 823.945 kb on + strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.950 kb on + strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.975 kb on - strand, within CCNA_00766 at 823.975 kb on - strand, within CCNA_00766 at 824.009 kb on + strand, within CCNA_00766 at 824.028 kb on + strand, within CCNA_00766 at 824.037 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.091 kb on + strand, within CCNA_00766 at 824.100 kb on + strand, within CCNA_00766 at 824.111 kb on - strand, within CCNA_00766 at 824.163 kb on - strand at 824.223 kb on - strand at 824.267 kb on + strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.368 kb on + strand, within CCNA_00767 at 824.376 kb on - strand, within CCNA_00767 at 824.410 kb on + strand at 824.412 kb on + strand at 824.412 kb on + strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.424 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.437 kb on - strand at 824.437 kb on - strand at 824.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 822,912 - +2.3 822,917 - +0.6 822,919 - +1.0 822,995 - +1.1 823,047 + +0.7 823,048 + -0.8 823,056 - -1.0 823,071 + +0.0 823,071 + +0.9 823,089 + +1.2 823,107 + +0.7 823,107 + +0.1 823,107 + -0.1 823,114 + -0.4 823,115 - -0.1 823,122 - -1.5 823,144 + -0.9 823,145 + -0.2 823,158 - +1.9 823,163 + +0.5 823,184 - CCNA_00765 0.11 +1.8 823,195 - CCNA_00765 0.14 +0.7 823,207 - CCNA_00765 0.19 -1.3 823,214 - CCNA_00765 0.21 +1.6 823,229 + CCNA_00765 0.26 +1.4 823,279 + CCNA_00765 0.43 +1.3 823,353 + CCNA_00765 0.69 +2.0 823,353 + CCNA_00765 0.69 +2.3 823,361 - CCNA_00765 0.71 +1.9 823,361 - CCNA_00765 0.71 -0.8 823,361 - CCNA_00765 0.71 +0.7 823,361 - CCNA_00765 0.71 +0.3 823,368 + CCNA_00765 0.74 +2.0 823,368 + CCNA_00765 0.74 +1.0 823,395 - CCNA_00765 0.83 -0.8 823,449 + +2.0 823,457 - -0.0 823,458 + +2.3 823,477 + +1.9 823,505 + +4.1 823,505 + +1.5 823,505 - -0.1 823,513 - +0.9 823,513 - +1.5 823,513 - +0.3 823,516 + +0.6 823,516 + +3.9 823,516 + +0.5 823,516 + +1.1 823,516 + +1.2 823,516 + +1.5 823,516 + +2.2 823,516 + +1.1 823,516 + +1.5 823,516 + -0.1 823,524 - +1.1 823,524 - -0.2 823,524 - +1.1 823,524 - +1.7 823,536 + +1.9 823,536 + +1.5 823,537 - +0.3 823,539 - +1.2 823,560 + +0.7 823,574 + +0.9 823,574 + +2.3 823,574 + +1.3 823,574 + -0.9 823,574 + +2.1 823,574 + -0.9 823,574 + +0.4 823,575 + +0.7 823,582 - +1.9 823,582 - +0.9 823,582 - +1.6 823,582 - +1.1 823,582 - +1.1 823,582 - -0.3 823,582 - +1.6 823,582 - +1.3 823,582 - +1.7 823,582 - +0.7 823,582 - +0.7 823,582 - +2.7 823,582 - +1.8 823,583 - -0.6 823,597 + +0.5 823,597 + -0.8 823,618 + +1.3 823,618 + -0.1 823,743 - CCNA_00766 0.24 -0.6 823,743 - CCNA_00766 0.24 +1.0 823,746 + CCNA_00766 0.25 -0.5 823,754 - CCNA_00766 0.26 -0.1 823,754 - CCNA_00766 0.26 +0.4 823,770 + CCNA_00766 0.29 -1.9 823,778 - CCNA_00766 0.30 +0.3 823,790 + CCNA_00766 0.32 +0.9 823,791 + CCNA_00766 0.33 -1.5 823,791 + CCNA_00766 0.33 -0.8 823,804 - CCNA_00766 0.35 -0.7 823,824 - CCNA_00766 0.38 +0.8 823,831 + CCNA_00766 0.40 +0.4 823,836 + CCNA_00766 0.40 -0.1 823,841 + CCNA_00766 0.41 +0.3 823,844 - CCNA_00766 0.42 +0.1 823,863 - CCNA_00766 0.45 +0.0 823,904 - CCNA_00766 0.52 +0.4 823,935 - CCNA_00766 0.58 +1.1 823,935 - CCNA_00766 0.58 +2.6 823,940 + CCNA_00766 0.58 -0.2 823,945 + CCNA_00766 0.59 -0.7 823,948 - CCNA_00766 0.60 -0.0 823,948 - CCNA_00766 0.60 +3.6 823,948 - CCNA_00766 0.60 +0.9 823,950 + CCNA_00766 0.60 -1.6 823,953 - CCNA_00766 0.61 +0.0 823,953 - CCNA_00766 0.61 +2.2 823,953 - CCNA_00766 0.61 +0.2 823,967 + CCNA_00766 0.63 +0.0 823,967 + CCNA_00766 0.63 -0.3 823,967 + CCNA_00766 0.63 -1.8 823,967 + CCNA_00766 0.63 +0.0 823,975 - CCNA_00766 0.64 +0.3 823,975 - CCNA_00766 0.64 +1.2 824,009 + CCNA_00766 0.70 +1.7 824,028 + CCNA_00766 0.74 -1.0 824,037 + CCNA_00766 0.75 -0.1 824,053 + CCNA_00766 0.78 -1.3 824,053 + CCNA_00766 0.78 -0.4 824,053 + CCNA_00766 0.78 +0.9 824,053 + CCNA_00766 0.78 +1.0 824,091 + CCNA_00766 0.84 +0.5 824,100 + CCNA_00766 0.86 +0.5 824,111 - CCNA_00766 0.88 +1.0 824,163 - -0.1 824,223 - -0.2 824,267 + CCNA_00767 0.24 -2.0 824,309 + CCNA_00767 0.45 -0.4 824,309 + CCNA_00767 0.45 +1.0 824,317 - CCNA_00767 0.49 +0.5 824,317 - CCNA_00767 0.49 -1.3 824,368 + CCNA_00767 0.74 -1.0 824,376 - CCNA_00767 0.77 +0.3 824,410 + -1.9 824,412 + -1.2 824,412 + -1.9 824,420 - -0.1 824,420 - +0.7 824,420 - +0.2 824,424 + +2.2 824,429 + -1.6 824,429 + -0.4 824,429 + -2.2 824,429 + -0.5 824,437 - -1.0 824,437 - -1.8 824,442 - -1.9
Or see this region's nucleotide sequence