Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22370

Experiment: R2A with Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22360 and CA265_RS22365 are separated by 1 nucleotidesCA265_RS22365 and CA265_RS22370 are separated by 134 nucleotidesCA265_RS22370 and CA265_RS22375 overlap by 11 nucleotidesCA265_RS22375 and CA265_RS22380 are separated by 133 nucleotides CA265_RS22360: CA265_RS22360 - hypothetical protein, at 5,489,288 to 5,490,877 _RS22360 CA265_RS22365: CA265_RS22365 - DNA-binding response regulator, at 5,490,879 to 5,491,622 _RS22365 CA265_RS22370: CA265_RS22370 - hypothetical protein, at 5,491,757 to 5,491,957 _RS22370 CA265_RS22375: CA265_RS22375 - hypothetical protein, at 5,491,947 to 5,492,567 _RS22375 CA265_RS22380: CA265_RS22380 - histidine--tRNA ligase, at 5,492,701 to 5,494,092 _RS22380 Position (kb) 5491 5492Strain fitness (log2 ratio) -1 0 1 2at 5490.775 kb on - strandat 5490.784 kb on + strandat 5490.785 kb on - strandat 5490.785 kb on - strandat 5490.790 kb on + strandat 5490.821 kb on - strandat 5490.876 kb on - strandat 5490.896 kb on - strandat 5490.960 kb on - strand, within CA265_RS22365at 5490.964 kb on + strand, within CA265_RS22365at 5490.968 kb on - strand, within CA265_RS22365at 5490.999 kb on - strand, within CA265_RS22365at 5491.072 kb on + strand, within CA265_RS22365at 5491.127 kb on + strand, within CA265_RS22365at 5491.167 kb on + strand, within CA265_RS22365at 5491.244 kb on - strand, within CA265_RS22365at 5491.339 kb on - strand, within CA265_RS22365at 5491.339 kb on - strand, within CA265_RS22365at 5491.384 kb on - strand, within CA265_RS22365at 5491.714 kb on + strandat 5491.715 kb on - strandat 5491.715 kb on - strandat 5491.771 kb on - strandat 5491.776 kb on + strandat 5491.894 kb on - strand, within CA265_RS22370at 5491.915 kb on - strand, within CA265_RS22370at 5491.916 kb on + strand, within CA265_RS22370at 5491.916 kb on + strand, within CA265_RS22370at 5491.920 kb on + strand, within CA265_RS22370at 5491.933 kb on + strand, within CA265_RS22370at 5491.955 kb on + strandat 5491.956 kb on - strandat 5492.132 kb on + strand, within CA265_RS22375at 5492.202 kb on - strand, within CA265_RS22375at 5492.246 kb on + strand, within CA265_RS22375at 5492.283 kb on + strand, within CA265_RS22375at 5492.291 kb on + strand, within CA265_RS22375at 5492.322 kb on - strand, within CA265_RS22375at 5492.328 kb on + strand, within CA265_RS22375at 5492.328 kb on + strand, within CA265_RS22375at 5492.388 kb on + strand, within CA265_RS22375at 5492.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.01 mg/ml
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5,490,775 - +0.2
5,490,784 + -1.1
5,490,785 - -0.8
5,490,785 - +0.2
5,490,790 + -1.7
5,490,821 - +0.6
5,490,876 - +0.1
5,490,896 - -1.7
5,490,960 - CA265_RS22365 0.11 -0.6
5,490,964 + CA265_RS22365 0.11 +0.5
5,490,968 - CA265_RS22365 0.12 -0.4
5,490,999 - CA265_RS22365 0.16 +0.7
5,491,072 + CA265_RS22365 0.26 +0.8
5,491,127 + CA265_RS22365 0.33 -1.4
5,491,167 + CA265_RS22365 0.39 +2.4
5,491,244 - CA265_RS22365 0.49 -0.2
5,491,339 - CA265_RS22365 0.62 +0.1
5,491,339 - CA265_RS22365 0.62 +0.3
5,491,384 - CA265_RS22365 0.68 +1.4
5,491,714 + -0.7
5,491,715 - +0.1
5,491,715 - +0.9
5,491,771 - +0.8
5,491,776 + -1.3
5,491,894 - CA265_RS22370 0.68 -1.5
5,491,915 - CA265_RS22370 0.79 +0.1
5,491,916 + CA265_RS22370 0.79 -1.0
5,491,916 + CA265_RS22370 0.79 -0.7
5,491,920 + CA265_RS22370 0.81 +0.3
5,491,933 + CA265_RS22370 0.88 -1.0
5,491,955 + -0.6
5,491,956 - +0.5
5,492,132 + CA265_RS22375 0.30 -0.5
5,492,202 - CA265_RS22375 0.41 -0.2
5,492,246 + CA265_RS22375 0.48 +0.2
5,492,283 + CA265_RS22375 0.54 -0.2
5,492,291 + CA265_RS22375 0.55 -0.7
5,492,322 - CA265_RS22375 0.60 -0.6
5,492,328 + CA265_RS22375 0.61 +0.1
5,492,328 + CA265_RS22375 0.61 +1.1
5,492,388 + CA265_RS22375 0.71 -0.5
5,492,526 - +0.7

Or see this region's nucleotide sequence