Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21730

Experiment: R2A with Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21725 and CA265_RS21730 are separated by 163 nucleotidesCA265_RS21730 and CA265_RS21735 are separated by 5 nucleotides CA265_RS21725: CA265_RS21725 - hypothetical protein, at 5,342,946 to 5,343,707 _RS21725 CA265_RS21730: CA265_RS21730 - hypothetical protein, at 5,343,871 to 5,344,797 _RS21730 CA265_RS21735: CA265_RS21735 - hypothetical protein, at 5,344,803 to 5,345,744 _RS21735 Position (kb) 5343 5344 5345Strain fitness (log2 ratio) -2 -1 0 1 2at 5342.885 kb on - strandat 5342.885 kb on - strandat 5342.885 kb on - strandat 5342.897 kb on - strandat 5342.924 kb on + strandat 5342.961 kb on - strandat 5342.966 kb on - strandat 5343.002 kb on - strandat 5343.002 kb on - strandat 5343.033 kb on - strand, within CA265_RS21725at 5343.034 kb on + strand, within CA265_RS21725at 5343.034 kb on + strand, within CA265_RS21725at 5343.245 kb on + strand, within CA265_RS21725at 5343.246 kb on - strand, within CA265_RS21725at 5343.251 kb on - strand, within CA265_RS21725at 5343.330 kb on - strand, within CA265_RS21725at 5343.336 kb on - strand, within CA265_RS21725at 5343.337 kb on + strand, within CA265_RS21725at 5343.338 kb on - strand, within CA265_RS21725at 5343.377 kb on + strand, within CA265_RS21725at 5343.385 kb on + strand, within CA265_RS21725at 5343.479 kb on + strand, within CA265_RS21725at 5343.480 kb on - strand, within CA265_RS21725at 5343.498 kb on + strand, within CA265_RS21725at 5343.499 kb on - strand, within CA265_RS21725at 5343.511 kb on + strand, within CA265_RS21725at 5343.512 kb on - strand, within CA265_RS21725at 5343.515 kb on + strand, within CA265_RS21725at 5343.516 kb on - strand, within CA265_RS21725at 5343.522 kb on + strand, within CA265_RS21725at 5343.562 kb on + strand, within CA265_RS21725at 5343.598 kb on + strand, within CA265_RS21725at 5343.598 kb on + strand, within CA265_RS21725at 5343.665 kb on - strandat 5343.665 kb on - strandat 5343.706 kb on - strandat 5343.706 kb on - strandat 5343.706 kb on - strandat 5343.786 kb on - strandat 5343.790 kb on + strandat 5343.813 kb on + strandat 5343.815 kb on + strandat 5343.829 kb on + strandat 5343.899 kb on + strandat 5343.899 kb on + strandat 5343.906 kb on + strandat 5343.920 kb on + strandat 5343.921 kb on - strandat 5343.969 kb on - strand, within CA265_RS21730at 5343.972 kb on + strand, within CA265_RS21730at 5344.041 kb on + strand, within CA265_RS21730at 5344.041 kb on + strand, within CA265_RS21730at 5344.042 kb on - strand, within CA265_RS21730at 5344.118 kb on - strand, within CA265_RS21730at 5344.206 kb on + strand, within CA265_RS21730at 5344.207 kb on - strand, within CA265_RS21730at 5344.278 kb on - strand, within CA265_RS21730at 5344.292 kb on + strand, within CA265_RS21730at 5344.296 kb on + strand, within CA265_RS21730at 5344.305 kb on + strand, within CA265_RS21730at 5344.401 kb on + strand, within CA265_RS21730at 5344.402 kb on - strand, within CA265_RS21730at 5344.409 kb on - strand, within CA265_RS21730at 5344.409 kb on - strand, within CA265_RS21730at 5344.489 kb on - strand, within CA265_RS21730at 5344.489 kb on - strand, within CA265_RS21730at 5344.545 kb on + strand, within CA265_RS21730at 5344.589 kb on - strand, within CA265_RS21730at 5344.721 kb on + strandat 5344.721 kb on + strandat 5344.722 kb on - strandat 5344.722 kb on - strandat 5344.723 kb on + strandat 5344.723 kb on + strandat 5344.833 kb on - strandat 5344.837 kb on + strandat 5344.838 kb on - strandat 5344.838 kb on - strandat 5344.874 kb on - strandat 5344.874 kb on - strandat 5344.874 kb on - strandat 5344.874 kb on - strandat 5344.881 kb on - strandat 5344.991 kb on + strand, within CA265_RS21735at 5345.047 kb on - strand, within CA265_RS21735at 5345.078 kb on - strand, within CA265_RS21735at 5345.098 kb on + strand, within CA265_RS21735at 5345.107 kb on + strand, within CA265_RS21735at 5345.128 kb on + strand, within CA265_RS21735at 5345.141 kb on - strand, within CA265_RS21735at 5345.297 kb on + strand, within CA265_RS21735at 5345.298 kb on - strand, within CA265_RS21735at 5345.298 kb on - strand, within CA265_RS21735at 5345.312 kb on - strand, within CA265_RS21735at 5345.350 kb on + strand, within CA265_RS21735at 5345.428 kb on - strand, within CA265_RS21735at 5345.524 kb on + strand, within CA265_RS21735at 5345.562 kb on - strand, within CA265_RS21735at 5345.655 kb on + strandat 5345.656 kb on - strandat 5345.663 kb on - strandat 5345.700 kb on + strandat 5345.701 kb on - strandat 5345.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.01 mg/ml
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5,342,885 - -2.0
5,342,885 - -0.3
5,342,885 - -0.4
5,342,897 - -1.0
5,342,924 + +0.1
5,342,961 - +0.1
5,342,966 - -0.1
5,343,002 - +1.8
5,343,002 - -0.1
5,343,033 - CA265_RS21725 0.11 +0.4
5,343,034 + CA265_RS21725 0.12 -0.2
5,343,034 + CA265_RS21725 0.12 +0.3
5,343,245 + CA265_RS21725 0.39 -1.4
5,343,246 - CA265_RS21725 0.39 -0.8
5,343,251 - CA265_RS21725 0.40 -1.3
5,343,330 - CA265_RS21725 0.50 -0.1
5,343,336 - CA265_RS21725 0.51 -0.1
5,343,337 + CA265_RS21725 0.51 +0.3
5,343,338 - CA265_RS21725 0.51 +0.5
5,343,377 + CA265_RS21725 0.57 +0.9
5,343,385 + CA265_RS21725 0.58 -0.4
5,343,479 + CA265_RS21725 0.70 +0.3
5,343,480 - CA265_RS21725 0.70 -1.0
5,343,498 + CA265_RS21725 0.72 -0.8
5,343,499 - CA265_RS21725 0.73 -1.7
5,343,511 + CA265_RS21725 0.74 -1.9
5,343,512 - CA265_RS21725 0.74 -0.0
5,343,515 + CA265_RS21725 0.75 +1.1
5,343,516 - CA265_RS21725 0.75 -0.3
5,343,522 + CA265_RS21725 0.76 +0.2
5,343,562 + CA265_RS21725 0.81 +0.1
5,343,598 + CA265_RS21725 0.86 -0.1
5,343,598 + CA265_RS21725 0.86 -0.4
5,343,665 - -0.0
5,343,665 - +0.8
5,343,706 - -1.9
5,343,706 - +0.2
5,343,706 - -0.1
5,343,786 - -0.7
5,343,790 + +0.3
5,343,813 + +0.5
5,343,815 + +1.4
5,343,829 + -0.5
5,343,899 + +0.4
5,343,899 + -0.1
5,343,906 + -0.0
5,343,920 + -0.5
5,343,921 - -1.3
5,343,969 - CA265_RS21730 0.11 -0.6
5,343,972 + CA265_RS21730 0.11 -0.2
5,344,041 + CA265_RS21730 0.18 +0.2
5,344,041 + CA265_RS21730 0.18 -0.5
5,344,042 - CA265_RS21730 0.18 +1.1
5,344,118 - CA265_RS21730 0.27 -0.2
5,344,206 + CA265_RS21730 0.36 -0.2
5,344,207 - CA265_RS21730 0.36 -0.2
5,344,278 - CA265_RS21730 0.44 -0.4
5,344,292 + CA265_RS21730 0.45 +0.2
5,344,296 + CA265_RS21730 0.46 -2.1
5,344,305 + CA265_RS21730 0.47 -0.1
5,344,401 + CA265_RS21730 0.57 -0.7
5,344,402 - CA265_RS21730 0.57 -1.0
5,344,409 - CA265_RS21730 0.58 -0.4
5,344,409 - CA265_RS21730 0.58 -0.7
5,344,489 - CA265_RS21730 0.67 +0.1
5,344,489 - CA265_RS21730 0.67 +0.0
5,344,545 + CA265_RS21730 0.73 +0.7
5,344,589 - CA265_RS21730 0.77 -0.8
5,344,721 + -0.2
5,344,721 + +0.9
5,344,722 - -0.1
5,344,722 - +1.5
5,344,723 + -0.2
5,344,723 + +1.4
5,344,833 - +0.3
5,344,837 + -0.9
5,344,838 - -0.3
5,344,838 - +0.1
5,344,874 - -2.0
5,344,874 - +0.3
5,344,874 - -0.6
5,344,874 - -1.2
5,344,881 - +0.5
5,344,991 + CA265_RS21735 0.20 -2.2
5,345,047 - CA265_RS21735 0.26 +1.1
5,345,078 - CA265_RS21735 0.29 -0.8
5,345,098 + CA265_RS21735 0.31 -1.4
5,345,107 + CA265_RS21735 0.32 +0.3
5,345,128 + CA265_RS21735 0.35 +0.5
5,345,141 - CA265_RS21735 0.36 +0.8
5,345,297 + CA265_RS21735 0.52 -0.9
5,345,298 - CA265_RS21735 0.53 +0.3
5,345,298 - CA265_RS21735 0.53 -0.5
5,345,312 - CA265_RS21735 0.54 +0.0
5,345,350 + CA265_RS21735 0.58 -0.3
5,345,428 - CA265_RS21735 0.66 +1.3
5,345,524 + CA265_RS21735 0.77 -0.1
5,345,562 - CA265_RS21735 0.81 -0.0
5,345,655 + +0.1
5,345,656 - -0.4
5,345,663 - +0.7
5,345,700 + +0.0
5,345,701 - +0.7
5,345,706 - -0.8

Or see this region's nucleotide sequence