Experiment: R2A with Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01555 and CA265_RS01560 are separated by 0 nucleotides CA265_RS01560 and CA265_RS01565 are separated by 2 nucleotides CA265_RS01565 and CA265_RS01570 are separated by 3 nucleotides
CA265_RS01555: CA265_RS01555 - KaiC 1, at 400,883 to 402,631
_RS01555
CA265_RS01560: CA265_RS01560 - circadian clock protein KaiB, at 402,632 to 402,922
_RS01560
CA265_RS01565: CA265_RS01565 - circadian clock protein KaiB, at 402,925 to 403,239
_RS01565
CA265_RS01570: CA265_RS01570 - hypothetical protein, at 403,243 to 405,012
_RS01570
Position (kb) 402
403 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 401.723 kb on - strand, within CA265_RS01555 at 401.723 kb on - strand, within CA265_RS01555 at 401.725 kb on - strand, within CA265_RS01555 at 401.764 kb on - strand, within CA265_RS01555 at 401.764 kb on - strand, within CA265_RS01555 at 401.889 kb on + strand, within CA265_RS01555 at 401.932 kb on - strand, within CA265_RS01555 at 402.030 kb on + strand, within CA265_RS01555 at 402.039 kb on + strand, within CA265_RS01555 at 402.040 kb on - strand, within CA265_RS01555 at 402.231 kb on - strand, within CA265_RS01555 at 402.231 kb on - strand, within CA265_RS01555 at 402.231 kb on - strand, within CA265_RS01555 at 402.232 kb on + strand, within CA265_RS01555 at 402.233 kb on - strand, within CA265_RS01555 at 402.316 kb on - strand, within CA265_RS01555 at 402.316 kb on - strand, within CA265_RS01555 at 402.318 kb on - strand, within CA265_RS01555 at 402.318 kb on - strand, within CA265_RS01555 at 402.437 kb on - strand, within CA265_RS01555 at 402.508 kb on + strand at 402.520 kb on - strand at 402.520 kb on - strand at 402.590 kb on - strand at 402.662 kb on + strand, within CA265_RS01560 at 402.662 kb on + strand, within CA265_RS01560 at 402.743 kb on + strand, within CA265_RS01560 at 402.745 kb on + strand, within CA265_RS01560 at 402.898 kb on + strand at 402.899 kb on - strand at 402.900 kb on + strand at 402.905 kb on - strand at 402.921 kb on - strand at 402.921 kb on - strand at 402.954 kb on + strand at 403.032 kb on + strand, within CA265_RS01565 at 403.033 kb on - strand, within CA265_RS01565 at 403.073 kb on - strand, within CA265_RS01565 at 403.110 kb on - strand, within CA265_RS01565 at 403.116 kb on - strand, within CA265_RS01565 at 403.263 kb on + strand at 403.263 kb on + strand at 403.264 kb on - strand at 403.282 kb on + strand at 403.282 kb on + strand at 403.365 kb on - strand at 403.365 kb on - strand at 403.413 kb on + strand at 403.413 kb on + strand at 403.484 kb on - strand, within CA265_RS01570 at 403.517 kb on + strand, within CA265_RS01570 at 403.583 kb on + strand, within CA265_RS01570 at 403.584 kb on - strand, within CA265_RS01570 at 403.596 kb on + strand, within CA265_RS01570 at 403.597 kb on - strand, within CA265_RS01570 at 403.597 kb on - strand, within CA265_RS01570 at 403.599 kb on + strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.763 kb on + strand, within CA265_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.01 mg/ml remove 401,723 - CA265_RS01555 0.48 +1.0 401,723 - CA265_RS01555 0.48 +1.0 401,725 - CA265_RS01555 0.48 +0.4 401,764 - CA265_RS01555 0.50 +0.8 401,764 - CA265_RS01555 0.50 -2.2 401,889 + CA265_RS01555 0.58 +2.7 401,932 - CA265_RS01555 0.60 -0.9 402,030 + CA265_RS01555 0.66 +2.0 402,039 + CA265_RS01555 0.66 +1.7 402,040 - CA265_RS01555 0.66 +0.1 402,231 - CA265_RS01555 0.77 +0.5 402,231 - CA265_RS01555 0.77 -1.6 402,231 - CA265_RS01555 0.77 -0.3 402,232 + CA265_RS01555 0.77 +3.9 402,233 - CA265_RS01555 0.77 +0.8 402,316 - CA265_RS01555 0.82 +0.9 402,316 - CA265_RS01555 0.82 +1.0 402,318 - CA265_RS01555 0.82 +0.3 402,318 - CA265_RS01555 0.82 +0.8 402,437 - CA265_RS01555 0.89 -0.2 402,508 + +2.8 402,520 - +0.3 402,520 - +0.2 402,590 - +0.8 402,662 + CA265_RS01560 0.10 +1.6 402,662 + CA265_RS01560 0.10 -0.5 402,743 + CA265_RS01560 0.38 -0.9 402,745 + CA265_RS01560 0.39 -1.4 402,898 + +0.2 402,899 - -0.6 402,900 + +0.2 402,905 - +0.2 402,921 - -1.4 402,921 - -0.8 402,954 + +1.2 403,032 + CA265_RS01565 0.34 +2.4 403,033 - CA265_RS01565 0.34 -0.3 403,073 - CA265_RS01565 0.47 -0.4 403,110 - CA265_RS01565 0.59 -0.2 403,116 - CA265_RS01565 0.61 +0.4 403,263 + +0.2 403,263 + -0.7 403,264 - +0.5 403,282 + -0.7 403,282 + -0.1 403,365 - -2.6 403,365 - -0.0 403,413 + +0.2 403,413 + +0.1 403,484 - CA265_RS01570 0.14 -0.1 403,517 + CA265_RS01570 0.15 -0.8 403,583 + CA265_RS01570 0.19 +0.1 403,584 - CA265_RS01570 0.19 -0.2 403,596 + CA265_RS01570 0.20 +0.4 403,597 - CA265_RS01570 0.20 +0.2 403,597 - CA265_RS01570 0.20 +3.0 403,599 + CA265_RS01570 0.20 -0.2 403,618 - CA265_RS01570 0.21 -0.1 403,618 - CA265_RS01570 0.21 -0.3 403,618 - CA265_RS01570 0.21 -0.5 403,763 + CA265_RS01570 0.29 -0.4
Or see this region's nucleotide sequence