Experiment: R2A with Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01160 and CA265_RS01165 are separated by 270 nucleotides CA265_RS01165 and CA265_RS01170 are separated by 6 nucleotides
CA265_RS01160: CA265_RS01160 - hypothetical protein, at 293,300 to 294,721
_RS01160
CA265_RS01165: CA265_RS01165 - hypothetical protein, at 294,992 to 295,540
_RS01165
CA265_RS01170: CA265_RS01170 - hypothetical protein, at 295,547 to 296,641
_RS01170
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.006 kb on + strand, within CA265_RS01160 at 294.007 kb on - strand, within CA265_RS01160 at 294.066 kb on + strand, within CA265_RS01160 at 294.068 kb on + strand, within CA265_RS01160 at 294.069 kb on - strand, within CA265_RS01160 at 294.100 kb on + strand, within CA265_RS01160 at 294.108 kb on + strand, within CA265_RS01160 at 294.108 kb on + strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.109 kb on - strand, within CA265_RS01160 at 294.169 kb on - strand, within CA265_RS01160 at 294.248 kb on - strand, within CA265_RS01160 at 294.358 kb on + strand, within CA265_RS01160 at 294.368 kb on + strand, within CA265_RS01160 at 294.395 kb on + strand, within CA265_RS01160 at 294.401 kb on - strand, within CA265_RS01160 at 294.438 kb on + strand, within CA265_RS01160 at 294.439 kb on - strand, within CA265_RS01160 at 294.439 kb on - strand, within CA265_RS01160 at 294.475 kb on + strand, within CA265_RS01160 at 294.484 kb on + strand, within CA265_RS01160 at 294.543 kb on - strand, within CA265_RS01160 at 294.567 kb on - strand, within CA265_RS01160 at 294.585 kb on - strand at 294.589 kb on + strand at 294.590 kb on - strand at 294.590 kb on - strand at 294.593 kb on - strand at 294.596 kb on - strand at 294.627 kb on - strand at 294.655 kb on + strand at 294.661 kb on + strand at 294.744 kb on - strand at 294.774 kb on - strand at 294.840 kb on + strand at 294.845 kb on + strand at 294.845 kb on + strand at 294.852 kb on + strand at 294.852 kb on + strand at 294.950 kb on - strand at 294.961 kb on + strand at 294.991 kb on - strand at 295.014 kb on + strand at 295.028 kb on + strand at 295.035 kb on - strand at 295.092 kb on + strand at 295.304 kb on - strand, within CA265_RS01165 at 295.436 kb on - strand, within CA265_RS01165 at 295.449 kb on - strand, within CA265_RS01165 at 295.486 kb on - strand at 295.502 kb on - strand at 295.512 kb on - strand at 295.535 kb on + strand at 295.535 kb on + strand at 295.536 kb on - strand at 295.568 kb on - strand at 295.604 kb on - strand at 295.672 kb on + strand, within CA265_RS01170 at 295.725 kb on + strand, within CA265_RS01170 at 295.725 kb on + strand, within CA265_RS01170 at 295.842 kb on + strand, within CA265_RS01170 at 295.842 kb on + strand, within CA265_RS01170 at 295.843 kb on - strand, within CA265_RS01170 at 295.862 kb on - strand, within CA265_RS01170 at 295.885 kb on + strand, within CA265_RS01170 at 295.923 kb on - strand, within CA265_RS01170 at 295.923 kb on - strand, within CA265_RS01170 at 295.952 kb on + strand, within CA265_RS01170 at 295.952 kb on + strand, within CA265_RS01170 at 296.150 kb on + strand, within CA265_RS01170 at 296.151 kb on - strand, within CA265_RS01170 at 296.151 kb on - strand, within CA265_RS01170 at 296.212 kb on + strand, within CA265_RS01170 at 296.237 kb on + strand, within CA265_RS01170 at 296.237 kb on + strand, within CA265_RS01170 at 296.285 kb on - strand, within CA265_RS01170 at 296.285 kb on - strand, within CA265_RS01170 at 296.303 kb on + strand, within CA265_RS01170 at 296.457 kb on + strand, within CA265_RS01170 at 296.511 kb on + strand, within CA265_RS01170 at 296.511 kb on + strand, within CA265_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.01 mg/ml remove 294,006 + CA265_RS01160 0.50 -0.4 294,007 - CA265_RS01160 0.50 +0.5 294,066 + CA265_RS01160 0.54 -0.5 294,068 + CA265_RS01160 0.54 +0.6 294,069 - CA265_RS01160 0.54 -0.2 294,100 + CA265_RS01160 0.56 +0.4 294,108 + CA265_RS01160 0.57 -0.9 294,108 + CA265_RS01160 0.57 -0.6 294,109 - CA265_RS01160 0.57 -0.6 294,109 - CA265_RS01160 0.57 +1.8 294,109 - CA265_RS01160 0.57 -0.1 294,109 - CA265_RS01160 0.57 -1.0 294,109 - CA265_RS01160 0.57 -0.5 294,169 - CA265_RS01160 0.61 +0.3 294,248 - CA265_RS01160 0.67 -0.1 294,358 + CA265_RS01160 0.74 +0.6 294,368 + CA265_RS01160 0.75 +0.9 294,395 + CA265_RS01160 0.77 -1.1 294,401 - CA265_RS01160 0.77 -0.7 294,438 + CA265_RS01160 0.80 +0.5 294,439 - CA265_RS01160 0.80 -0.9 294,439 - CA265_RS01160 0.80 -0.8 294,475 + CA265_RS01160 0.83 +2.3 294,484 + CA265_RS01160 0.83 -0.8 294,543 - CA265_RS01160 0.87 +0.3 294,567 - CA265_RS01160 0.89 +1.3 294,585 - -0.2 294,589 + -0.3 294,590 - -0.3 294,590 - +0.5 294,593 - +1.3 294,596 - +1.2 294,627 - +1.0 294,655 + -0.8 294,661 + +0.4 294,744 - +0.3 294,774 - +0.6 294,840 + -0.3 294,845 + -0.3 294,845 + +0.7 294,852 + -1.1 294,852 + -1.7 294,950 - -0.6 294,961 + -0.4 294,991 - +0.0 295,014 + +1.0 295,028 + +0.0 295,035 - -0.0 295,092 + -0.7 295,304 - CA265_RS01165 0.57 -1.0 295,436 - CA265_RS01165 0.81 -0.2 295,449 - CA265_RS01165 0.83 -1.5 295,486 - +0.1 295,502 - +0.6 295,512 - +0.3 295,535 + +0.3 295,535 + +1.0 295,536 - +0.0 295,568 - +0.4 295,604 - -0.2 295,672 + CA265_RS01170 0.11 +1.5 295,725 + CA265_RS01170 0.16 +2.2 295,725 + CA265_RS01170 0.16 -0.3 295,842 + CA265_RS01170 0.27 -2.2 295,842 + CA265_RS01170 0.27 -0.1 295,843 - CA265_RS01170 0.27 +0.1 295,862 - CA265_RS01170 0.29 -1.2 295,885 + CA265_RS01170 0.31 +0.1 295,923 - CA265_RS01170 0.34 +0.6 295,923 - CA265_RS01170 0.34 -0.1 295,952 + CA265_RS01170 0.37 -0.1 295,952 + CA265_RS01170 0.37 +0.6 296,150 + CA265_RS01170 0.55 -0.5 296,151 - CA265_RS01170 0.55 -0.1 296,151 - CA265_RS01170 0.55 -0.2 296,212 + CA265_RS01170 0.61 +0.3 296,237 + CA265_RS01170 0.63 -0.2 296,237 + CA265_RS01170 0.63 -2.1 296,285 - CA265_RS01170 0.67 +0.2 296,285 - CA265_RS01170 0.67 +0.1 296,303 + CA265_RS01170 0.69 +0.1 296,457 + CA265_RS01170 0.83 -0.8 296,511 + CA265_RS01170 0.88 -0.7 296,511 + CA265_RS01170 0.88 +0.4
Or see this region's nucleotide sequence